BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920198
Length=1076
Score E
Sequences producing significant alignments: (Bits) Value
AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr... 1775 0.0
AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding fac... 614 7e-175
AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor... 279 3e-74
> AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542168-4543742
FORWARD LENGTH=1575
Length=1575
Score = 1775 bits (961), Expect = 0.0
Identities = 1037/1074 (97%), Gaps = 4/1074 (0%)
Strand=Plus/Plus
Query 4 aaaaaaaCTA-AGATTAAATGGAAGT-GAGTAGCGTAGACGAGAGTACTACAAGTACAGG 61
|||||||| | ||||||||||||| | ||||||||| || ||||||||||||||||||||
Sbjct 202 AAAAAAAC-ACAGATTAAATGGAA-TCGAGTAGCGTTGATGAGAGTACTACAAGTACAGG 259
Query 62 TTCCATCTGTGAAACTCCGACGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 121
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 260 TTCCATCTGTGAAACCCCGGCGATAACTCCGGCGAAAAAGTCGTCGGTAGGTAACTTATA 319
Query 122 CAGGATGGGAAGCGGATCAAGCGTGGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 181
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 320 CAGGATGGGAAGCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAGCTGAATC 379
Query 182 TAGGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAACCAAACGGAAGATGGGG 241
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 380 TAGGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAAGATGGGG 439
Query 242 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACATTCAACGAAGAAGACGA 301
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 440 AGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAGAAGACGA 499
Query 302 AGCTGCTCGTTCCTACGACGTGGCGGTTCACCGGTTCCGTGGTCGTGACGCCGTCACAAA 361
||| |||||| |||||||||| ||||||||| |||||||| | |||||||||||||||||
Sbjct 500 AGCCGCTCGTGCCTACGACGTCGCGGTTCACAGGTTCCGTCGCCGTGACGCCGTCACAAA 559
Query 362 TTTTAAAGACGTGAAGATGGACGAAGACGAGGTCGAGTTCTTGAATTCTCATTCGAAATC 421
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 560 TTTCAAAGACGTGAAGATGGACGAAGACGAGGTCGATTTCTTGAATTCTCATTCGAAATC 619
Query 422 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 620 TGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGTTAGAGCAGAGTAAACG 679
Query 482 GCGTCGTAACGGTAACGGAAACATGGTTAGGACGATGTTAACGTCGGGGTTGAGTAATGA 541
||||||||| ||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 680 GCGTCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACGTCGGGGTTGAGTAATGA 739
Query 542 TGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 601
||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TGGTGTTTCTACGACGGGGTTTAGATCGGCGGAGGCACTGTTTGAGAAAGCGGTAACGCC 799
Query 602 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCGGAGAAACACTT 661
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 800 AAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACATCACGCAGAGAAACATTT 859
Query 662 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGATGTTAA 721
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 860 TCCGTTACCGTCAAGTAACGTTTCCGTGAAAGGAGTGTTGTTGAACTTTGAGGACGTTAA 919
Query 722 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 CGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGGAACAGTAGTCAGAGTTATGTTTTGAC 979
Query 782 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGCTT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 980 TAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGTTT 1039
Query 842 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1040 CAGTAGATCTAACGGTCAGGATCAACAGTTGTACATTGGGTGGAAGTCGAGATCCGGGTC 1099
Query 902 GGATTTAGAAACGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 961
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 AGATTTAGATGCGGGTCGGGTTTTGAGATTGTTCGGAGTTAACATTTCACCGGAGAGTTC 1159
Query 962 CAGAAACGACGTCGTAGGGAACAAGAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1021
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1160 AAGAAACGACGTCGTAGGAAACAAAAGAGTGAACGATACTGAGATGTTATCGTTGGTGTG 1219
Query 1022 TAGTAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCtttttttt 1075
||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 TAGCAAGAAGCAACGCATCTTTCACGCCTCGTAACAACTCTTCTTCTTTTTTTT 1273
> AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding factor
3 | chr3:9396420-9397747 FORWARD LENGTH=1328
Length=1328
Score = 614 bits (332), Expect = 7e-175
Identities = 688/855 (80%), Gaps = 43/855 (5%)
Strand=Plus/Plus
Query 118 TATACAGGATGGGAAGCGGATCAAGCGTGGT-GTTAGATTCAGAGAAC-G-G-C---GT- 169
|||| || |||||||||||| |||||||||| || |||||||||||| | | | ||
Sbjct 171 TATATAGAATGGGAAGCGGAACAAGCGTGGTACTT-GATTCAGAGAACGGTGTCGAAGTC 229
Query 170 --A---GAAGCTGAATCTAGGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAA 224
| ||||| ||||| || |||||||| || |||| || ||||||||| || || |||
Sbjct 230 GAAGTCGAAGCCGAATCAAGAAAGCTTCCTTCTTCAAGATTCAAAGGTGTTGTTCCTCAA 289
Query 225 CCAAACGGAAGATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACA 284
||||| |||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 290 CCAAATGGAAGATGGGGAGCTCAGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACT 349
Query 285 TTCAACGAAGAAGACGAAGCTGCTCGTTCCTACGACGTGGCGGTTCACCGGTTCCGTGGT 344
|||||||| ||||||||||| |||||| | |||||||| |||| |||||| ||||||||
Sbjct 350 TTCAACGAGGAAGACGAAGCAGCTCGTGCTTACGACGTCGCGGCTCACCGTTTCCGTGGC 409
Query 345 CGTGACGCCGTCACAAATTTTAAAGACGTGAAGATGGACGAAGACGAGGTCGAGTTCTTG 404
|| || ||||| || ||||| |||||| || | | |||||| ||||| ||||||||
Sbjct 410 CGCGATGCCGTTACTAATTTCAAAGACACGACGTT---CGAAGAAGAGGTTGAGTTCTTA 466
Query 405 AATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAG 464
|| | ||||||||||| |||||||| ||||||||||| ||||| ||||| || ||||||
Sbjct 467 AACGCGCATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACAAAGAAGAG 526
Query 465 TTAGAGCAGAGTAAACGGCGTCGTAACGGTAACGGAAACATG-GTTAGGACGATGTTAAC 523
||||| || || ||||| ||| ||||||||||||| | | | | |||| ||| |
Sbjct 527 TTAGACCAAAGGAAACGTAACCGTGACGGTAACGGAAA-A-GAG--ACGACGGCGTTTGC 582
Query 524 GTCGGGGTTGAGTAATGATGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGGCACTGTT 583
| || || | | || |||| | | |||| || ||||| | |||||||| ||||||
Sbjct 583 TTTGGC-TTC-G-A-TGGTGGT-TAT-GACG--GG-GTTTAAAACGGCGGAGTTACTGTT 633
Query 584 TGAGAAAGCGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGAAACA 643
||||||| ||||||||||||| ||||| ||||| ||||||||||| |||||||| |||||
Sbjct 634 TGAGAAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAAACA 693
Query 644 TCACGCGGAGAAACACTTTCCGTTACCGTCAAGTAA------CGTTTCCGTGAAAGG-AG 696
|| ||||||||||| ||||||||||||| | |||| ||| ||||| ||||| |
Sbjct 694 CCAAGCGGAGAAACATTTTCCGTTACCGTTAGGTAATAATAACGTCTCCGTTAAAGGTA- 752
Query 697 TGTTGTTGAACTTT-GAGGATGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCGTATTGG 755
|| ||||||| ||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct 753 TGCTGTTGAA-TTTCGAAGACGTTAACGGGAAAGTGTGGAGGTTCCGTTACTCTTATTGG 811
Query 756 AACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTGGAGCAGGTTCGTTAAGGAGAAGA-A 814
|| |||||||| |||||||| ||||| ||||||||||| || |||||||| ||||||| |
Sbjct 812 AATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTAGATTCGTTAAAGAGAAGAGA 871
Query 815 TCTACGTGCTGGTGACGTGGTTAGCTTCAGTAGATCTAACGGTCAGGATCAACAGTTGTA 874
|| |||||||||| || | || || | ||||| |||| ||| |||||| | || |
Sbjct 872 -CTTTGTGCTGGTGATTTGATCAGTTTTAAAAGATCCAACGATCAAGATCAAAAATTCTT 930
Query 875 CATTGGGTGGAAGTCGAGATCCGGGTCGGATTTAGAAACGGGTCGGGTTTTGAGATTGTT 934
|| |||||||| |||| |||||||| |||| |||| |||||||||||| ||||||||||
Sbjct 931 TATCGGGTGGAAATCGAAATCCGGGTTGGATCTAGAGACGGGTCGGGTTATGAGATTGTT 990
Query 935 CGGAGTTAACATTTC 949
|| ||| | |||||
Sbjct 991 TGGGGTTGATATTTC 1005
> AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor
family protein | chr1:8981677-8983041 REVERSE LENGTH=1365
Length=1365
Score = 279 bits (151), Expect = 3e-74
Identities = 588/785 (75%), Gaps = 86/785 (11%)
Strand=Plus/Plus
Query 120 TACAGGATGGGAA---GCGG-ATCAAGCGTGGTGTTAGATTCAGAGAACGGCGTAGAAG- 174
||||| ||||||| |||| | | ||||| || || ||||||||||||||||| | ||
Sbjct 192 TACAGAATGGGAAGCGGCGGAAGC-AGCGTCGTTTTGGATTCAGAGAACGGCGTCG-AGA 249
Query 175 CTGAATCTA-GGAAGCTTCCGTCATCAAAATACAAAGGTGTGGTGCCGCAACCAAACGGA 233
| || || | | |||||||| || || ||||| ||||| || ||||| || || ||||||
Sbjct 250 CCGAGTC-ACGTAAGCTTCCTTCGTCGAAATATAAAGGCGTTGTGCCTCAGCCTAACGGA 308
Query 234 AGATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGTACATTCAACGAA 293
|||||||||||||||||||||||||| || ||||| || ||||||||||| ||||||||
Sbjct 309 AGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGAG 368
Query 294 GAAGACGAAGCTGC-TCGTTCCTACGACGTGGCGGTTCACCG-G-TTCCGTGGTCGTGAC 350
||||| |||||||| || ||| |||||| | || || | | | ||||| || || |||
Sbjct 369 GAAGAAGAAGCTGCGTC-TTCTTACGACATCGCCGTG-AG-GAGATTCCGCGGCCGCGAC 425
Query 351 GCCGTCACAAATTTTAAAGACGTGAAG---ATGGA--CGAAGACGAGGTCGAG-TT--CT 402
|||||||| || || ||| | | ||| ||||| ||| | ||| ||| | || ||
Sbjct 426 GCCGTCACTAACTTCAAAT-C-TCAAGTTGATGGAAACGACGCCGAA-TCG-GCTTTTCT 481
Query 403 TGAATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAG 462
||| ||||||| ||| |||||||||| ||||||||||||||||| ||||| ||| |
Sbjct 482 TGACG-CTCATTCTAAAGCTGAGATCGTGGATATGTTGAGGAAACACACTTACGCCGATG 540
Query 463 AGTTAGAGCAGAGTAAACGGC-GTC-GT-AACGGTAACGGAAACATGGT-TAGGACGATG 518
|||| |||||||||| |||| || || ||||| ||||||| | | | | || | ||
Sbjct 541 AGTTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGGAAA-ACGCTCT-GG--GTTG 596
Query 519 TTA-ACGTCGGGGTT-GAGTAATGATGGTGTTTCGACGACGGAGTTTAGATCGGCGGAGG 576
| ||| || || | | || || | ||||| || || | | | | | |||
Sbjct 597 G-AGACGGCGACGTACG-GAAACGACGCTGTTTTGA-GA-GC-GC---G-T-G----AGG 642
Query 577 CACTGTTTGAGAA-AGCGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATA 635
|||| ||||| | | || ||||| |||||||| |||||||| |||||||| || |||
Sbjct 643 TTTTGTTCGAGAAGA-CTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGATA 701
Query 636 CCGAAACATCACGCGGAGAAACACTTTCCGTTACCG----T--C-A-----A-G----T- 677
|||||||| ||||||||||| || |||||||||||| | | | | | |
Sbjct 702 CCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGATG 761
Query 678 AA-C-GTTTCCGT-GAAAGGAGTGTTG-TTGAACTTTGAGGAT-GTTAAC-GGGAAAGTG 731
|| | || |||| |||||| || ||| || ||||| || ||| | ||| |||||||||
Sbjct 762 AATCCGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGATAG--AACAGGGAAAGTG 818
Query 732 TGGAGGTTCCGTTACTCGT-ATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTG 790
||| ||||||||||| || | |||||||| ||||| ||||| || ||||| || || ||
Sbjct 819 TGGCGGTTCCGTTACA-GTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTG 877
Query 791 GAGCAGGTTCGTTAAGGAGAAGAATCTACGTGCTGGTGACGTGGTTAGCTTC-AGTAGAT 849
|||| |||||||||| ||||||||||| || || ||||| |||||| | ||| || ||||
Sbjct 878 GAGCCGGTTCGTTAAAGAGAAGAATCTTCGAGCCGGTGATGTGGTTTGTTTCGAG-AGAT 936
Query 850 CTAAC 854
| |||
Sbjct 937 C-AAC 940
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52710572250
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5