BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920316
Length=1382
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14280.1 | Symbols: PKS2 | phytochrome kinase substrate 2 | ... 2143 0.0
AT2G02950.1 | Symbols: PKS1 | phytochrome kinase substrate 1 | ... 169 8e-41
> AT1G14280.1 | Symbols: PKS2 | phytochrome kinase substrate 2
| chr1:4877627-4879149 FORWARD LENGTH=1523
Length=1523
Score = 2143 bits (1160), Expect = 0.0
Identities = 1309/1379 (95%), Gaps = 18/1379 (1%)
Strand=Plus/Plus
Query 1 TAATACA-AAAAAGAAGAGAAAATGGTAACCTTAACTTCATCTTCTTCAACTCCAAATGT 59
||||||| |||||||| | |||||||| ||||||||||||||||||||||||||||| ||
Sbjct 10 TAATACACAAAAAGAA-ACAAAATGGTGACCTTAACTTCATCTTCTTCAACTCCAAACGT 68
Query 60 ATCTTTTGATTTCATGATGAACAATAATAATAACAGTAACAATCTCTATGGTCctttctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 69 ATCTTTTGATTTCATGATGAACAATAATAATAACAGTAACAATCTCTATGGTCCTTTCTC 128
Query 120 ttcttcttctacttctttctcttACTTGACAAGCAAGGAAGATACTCTCACTCAGAAGAA 179
||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 129 TTCTTCTTCTACTTCTTTCTCTTACTTGACAAGCAAGGAAGATGCTCTCACCCAGAAGAA 188
Query 180 CCTAATGAGTGGTATCAACATGAACATCAATCCAGATGTTCTTGGAGTTAACAAGAAAGC 239
||||||||||||||| | || |||| |||||||||||| |||||||||||||
Sbjct 189 CCTAATGAGTGGTAT---C----AC--CAAT---GATGTTCTTGGAATTAACAAGAAAGC 236
Query 240 TTCTGAAGATCTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGATATGGA 299
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 237 TTCTGAAGATTTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGAGATATGGA 296
Query 300 TTCCGACCACAGTCCTAGACTTGTGTCTTCTCTGCCAGATCCAGAAGTTCCAATAGAGAG 359
||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 297 TTCTGACCACAGTCCTAGACTTGTGTCTCCTCTGCCAGATCCAGAAGTTCCAATAGAGAG 356
Query 360 AATCTTTGTTCCTCCGAAGCAAAGCTCGAAGAATTCCTCGGAAACTCCGAGTCTTCGGTC 419
|||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 357 AATCTTTGTTGGTCCGAAGCAAAGCTCGAAGAATTCCTCGGAAACTCCTAGTCTTCGGTC 416
Query 420 TGAATCTAGCTGGAATAGCCAGAGCTTGTTGCTTCAGAATAAATATATGGAGAAGAAGAA 479
|||||| || |||||||||||||| ||||||||||||| |||||| | |||||||||||
Sbjct 417 TGAATCCAGTTGGAATAGCCAGAGTTTGTTGCTTCAGAGCAAATATGTAGAGAAGAAGAA 476
Query 480 GAACATCAAGAACAACTCTAGCTGCAACAGTTACTTTCAGGAGAAGGATATAAGTAGCAA 539
|||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 477 GAACATCAAGAAAAACTCTAGTTGCAACAGTTACTTTCAGGAGAAGGATATGAGTAGCAA 536
Query 540 TCACAAGGTGAGTAATAAGAAGAGTTTTCTTGCTACTCTTGGCTGCAGATGTGTGTGTTC 599
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 537 TCACAAGGTGAGTAATAAGAAGAGTTTTCTCGCTACTCTTGGCTGCAGATGCGTGTGTTC 596
Query 600 GAACTGGAGTTCAGTAGATGTTGTCGATGAGAAGAGAAGAAGCTCTGGTCTGAAGAAGAT 659
||||||||||||||| ||||| ||||| || |||||||||||||||||||||||||||||
Sbjct 597 GAACTGGAGTTCAGTGGATGTCGTCGACGACAAGAGAAGAAGCTCTGGTCTGAAGAAGAT 656
Query 660 CAGGACTCAGTTGAGTTTCTCTGGAGATCTAAGCTCGGAGATGAAGATTCATCAACAACA 719
|| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 657 CAAGACTCAATTGAGTTTCTCTGGAGATCTAAGCTCGGAGATGAAGATTCATCAACAACA 716
Query 720 ACAAGAAGCAATGTTAGAGCAGAGGAAGTCTCTGGAAATATTTGGATCTCCTCTTATTGA 779
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ACAAGAAGCAATGCTAGAGCAGAGGAAGTCTCTGGAAATATTTGGATCTCCTCTTATTGA 776
Query 780 GAAGAGAATCATTCAGAAGAAATTCCCATGGGAATACTCGAGCTCTGCGAAAAAAGAGGA 839
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 777 GAAGAGAATCATTCAGAAGAAATTTCCATGGGAATACTCGAGCTCTGCGAAAAAAGAAGA 836
Query 840 ACATGGATTCTCTGTGAAGTATGAAGAAGAAGAAGATGGGAGTGTGAGCGATGTAAGTAC 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ACATGGATTCTCTGTGAAGTATGAAGAAGAAGAAGATGGGAGTGTGAGCGATGTAAGTAC 896
Query 900 GGATCTTTTTGAGATTGAGAGCTTAACAGGGAAGGCAAAGCCCTTT-CTTGCAAGGCAAG 958
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 897 GGATCTTTTTGAGATTGAGAGCTTAACAGGGAAGGCAAA-CCCTTTTCTTGCAAGGCAAG 955
Query 959 GAAGTAGTGATCCAGACTCACC-GAATGGTTATGCACCAAGTGAGGTAAGCATACAGTGG 1017
|||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||
Sbjct 956 GAAGTAGTGATCCAGACTCACCAGA-TGGTTATGCACCAAGTGAGGTAAGCATACAATGG 1014
Query 1018 AGTGTAGTAACGGCAAGTGTAGCGGATTTCTCTGTTATGTCTGAATGTGCAACGAGTCCT 1077
|||||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 1015 AGTGTAGTGACAGCAAGTGTAGCAGATTTCTCTGTTATGTCTGAATGTGCTACGAGTCCC 1074
Query 1078 GTCAAAAAGAACCGGTCTTTTCAGATTCCTCGAATTCCTATCATGGCGAAATTAAACCGA 1137
||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||
Sbjct 1075 GTCAAAAAGAACCGGTCTTTTCAGATTCCTCGAATCCCTATCATGGCAAAATCAAACCGA 1134
Query 1138 GAAACCGCGCCTCAGAGACGGAAATCGAGCAGTGGCGGTTTATTAATGGGATGCAAGAGT 1197
|||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct 1135 GAAATCGCGCCTCAGAGACGGAAATCTAGCAGTAGCGGTTTATTAATGGGATGCAAGAGT 1194
Query 1198 CATAAATCTGTCAGAGTTTCTGGTGATTCGTACACAAGCATGAACAGAACACCGAGTTAT 1257
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1195 CATAAATCTGTCAGAGTTTCTGGTGATTCATACACAAGCATGAACAGAACACCGAGCTAT 1254
Query 1258 GTTCCAAGATTCCCCGTAGAAGCTAATCCAACAAGCATTGAGACAAGAAGGAGGATCAGC 1317
|||||||||||||| |||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 1255 GTTCCAAGATTCCCTGTAGAAGCTAATCCAACAAGCACTGAAACAAGAAGGAGGATCAGC 1314
Query 1318 AGTAGTTCGGTTTCTCACACGCAATCGCCTTTTTTGTATACTTAATGATGCCAAAAACC 1376
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1315 AGTAGTTCTGTTTCTCACACGCAATCGCCTTTTTTGTATACTTAATTATGCCAAAAACC 1373
> AT2G02950.1 | Symbols: PKS1 | phytochrome kinase substrate 1
| chr2:854947-856538 REVERSE LENGTH=1592
Length=1592
Score = 169 bits (91), Expect = 8e-41
Identities = 192/237 (81%), Gaps = 21/237 (9%)
Strand=Plus/Plus
Query 232 AAGAAAGCTTCTGAAGATCTGGAGATCAGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 291
||||||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 293 AAGAAAGCTCCTGAAGATCCAGAGATTGGTGTGTTTGGAGCTGAGAAGTACTTCAATGGA 352
Query 292 GATATGGATTCCGACCACAG-TCCTAGACTTGTGTCT-TCTCTGCCAGATCCAGAAGTTC 349
|| |||||||| ||||| || | |||| | || ||| |||||| || | |||||||||
Sbjct 353 GACATGGATTCAGACCA-AGGTTCTAG--T-GT-TCTGTCTCTGACAAACCCAGAAGTT- 406
Query 350 CAATAGAGAGAATCTTTGTTC--CTCCGAAGCAAAGCTCGAAGAATTC--CTCGGAAACT 405
||||||| | | || | ||| |||||| ||| ||||||| || || || | ||
Sbjct 407 -----GAGAGAACCGTCGT-CGACTC-GAAGCAGAGCGCGAAGAAATCTACT-GGTA-CT 457
Query 406 CCGAGTCTTCGGTCTGAATCTAGCTGGAATAGCCAGAGCTTGTTGCTTCAGAATAAA 462
|||||| | ||||||||||| ||||||||||| |||||| ||||||||||||| |||
Sbjct 458 CCGAGTGTCCGGTCTGAATCAAGCTGGAATAGTCAGAGCGTGTTGCTTCAGAACAAA 514
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68071939020
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5