BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920406 Length=1379 Score E Sequences producing significant alignments: (Bits) Value AT1G15000.1 | Symbols: scpl50 | serine carboxypeptidase-like 50... 1818 0.0 > AT1G15000.1 | Symbols: scpl50 | serine carboxypeptidase-like 50 | chr1:5168596-5170066 FORWARD LENGTH=1471 Length=1471 Score = 1818 bits (984), Expect = 0.0 Identities = 1237/1359 (91%), Gaps = 17/1359 (1%) Strand=Plus/Plus Query 11 TAGTGGCGATAATGGAGCACGGCC-CTACATTCTTCTTCTTGCTTTCCACTCTCGTCCTC 69 |||||| ||||||||||| ||| ||||| ||||| | ||||||||||||||| ||||| Sbjct 7 TAGTGGAAATAATGGAGCA-AGCCACTACACTCTTCATATTGCTTTCCACTCTCCTCCTC 65 Query 70 GCCGTTTCCGTTAAGTCTCCTCCGCCTCCTCTATTTCCCGATGAAGCTCTCCCCACTAAA 129 ||||| |||||| ||||||||| ||| || |||||||||||||||||||||||||||||| Sbjct 66 GCCGTCTCCGTTGAGTCTCCTCAGCCACCGCTATTTCCCGATGAAGCTCTCCCCACTAAA 125 Query 130 TCCGGATACCTTCCGGTTAAACCAGC-CTCAGGCTCCTTCATGTTTTATGCCTTCTACGA 188 || || ||||| ||||||||||| || | | ||||| | |||||| |||||||||||||| Sbjct 126 TCTGGCTACCTCCCGGTTAAACCCGCAC-CCGGCTCGTCCATGTTCTATGCCTTCTACGA 184 Query 189 AGCCCAAAAGCCGACCACACTTCTTCCCGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 248 ||||||| |||| ||||||| |||||| |||||||||||||||||||||||||||||||| Sbjct 185 AGCCCAAGAGCCAACCACACCTCTTCCTGACACTCCGCTCCTCGTTTGGCTCCAAGGTGG 244 Query 249 GCCAGGCTGCTCTTCAATGATTGGCAACTTCTACGAGCTCGG-CCCGTGGCGCGTTA-TG 306 |||||||||||||||||||||||||||||| ||||||||||| ||| ||||| | || | Sbjct 245 GCCAGGCTGCTCTTCAATGATTGGCAACTTTTACGAGCTCGGTCCC-TGGCGTG-TAGTT 302 Query 307 TCAAGCGCCACTGAGCTTGAGCGCAACCCAGGCGCTTGGAACCGTCTCTTTGGGCTACTC 366 ||| ||||||| || || ||||||||||| ||||| ||||||||||| || || ||||| Sbjct 303 TCACGCGCCACAGACCTCGAGCGCAACCCCGGCGCATGGAACCGTCTATTCGGACTACTT 362 Query 367 TTCGTGGATAACCCTATAGGAGTCGGATTCAGCATCGCCTCCTCTA-AACAAGACATACC 425 || ||||||||||| ||||||||||||||||||||||| |||| | ||||||||||||| Sbjct 363 TTTGTGGATAACCCAATAGGAGTCGGATTCAGCATCGCAGCCTC-ACAACAAGACATACC 421 Query 426 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCAGCTCTCGTGGAGTTCCTTGAGCA 485 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct 422 CACAAATCAGAGACAGGTCGCTGAGCATCTTTACGCCGCTCTCGTGGAGTTCCTTGAACA 481 Query 486 AAACCCAGGCTTTGAAAACCGACCGGTTTACTTCACTGGCGAGAGCTACGCTGGTAAGTA 545 ||||||| |||| |||||||||||||||||||||||||| ||||||||||| || ||||| Sbjct 482 AAACCCAAGCTTCGAAAACCGACCGGTTTACTTCACTGGAGAGAGCTACGCCGGGAAGTA 541 Query 546 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 CGTTCCAGCCATTGGATACTATATCCTTAAAGAGAAACCCAATGGGAAAGTGAATCTAAA 601 Query 606 GGGCCTAGCCATTGGAAACGGGCTGACCGATCCCG-TGACCCAGGTCCAAACCCATGCGG 664 ||| |||||||||||||||||||||||||| |||| |||||||||| ||||||||||||| Sbjct 602 GGGGCTAGCCATTGGAAACGGGCTGACCGA-CCCGGTGACCCAGGTTCAAACCCATGCGG 660 Query 665 TCAATGTTTACTACTCGGGTCTGGTCAACGCTAAACAGAGAGGTGAAGTGGAGAAAGCGC 724 |||| || ||||||||||||||||||||||| |||||||||| |||| || | ||||||| Sbjct 661 TCAACGTCTACTACTCGGGTCTGGTCAACGCAAAACAGAGAGTTGAACTGCAAAAAGCGC 720 Query 725 AGGAGATAGCCGTAGCTCTCGTGAAGTCACAGAAATGGCGTGAAGCAGCAGACGCGAGGA 784 |||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 721 AGGAGATATCTGTAGCTCTCGTGAAGTCCCAGAAATGGCGTGAAGCAGCAGACGCGAGGA 780 Query 785 CGGAGCTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTATACAACACGGCAC 844 | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 781 CCGAACTGTTGACGCTACTAAGTAACATGACAGGACTCGCGACGCTCTACAACACGGCAC 840 Query 845 GTTCGATTCCGTACAGAACAGACCTCGTGTTGGACCTTCTA-AACCAGAGAGAGGCTAAG 903 | ||||||| |||||||||||||||||| ||||||| || ||||||||||| || || Sbjct 841 GGGCGATTCCATACAGAACAGACCTCGTGGTGGACCT-CTTGAACCAGAGAGAAGCAAAA 899 Query 904 CGAGTTTTGGGAGTGAGCGAAACAATGCGTTTTGAGGATTGTAGTGATGAAGTAGAAGAT 963 || |||||||||||||| ||||| | ||||||||||| ||||||||||||||||||||| Sbjct 900 CGTGTTTTGGGAGTGAGTGAAACGGTTCGTTTTGAGGAATGTAGTGATGAAGTAGAAGAT 959 Query 964 GTGCTGCGAGAAGATGTGATGAAGAGCGTTAAGTTCATGGTGGAGTACGCATTAGAGAGG 1023 ||| |||| | ||| |||||||||||||| ||||||||||||||||||||||| |||||| Sbjct 960 GTGTTGCGGGCAGACGTGATGAAGAGCGTAAAGTTCATGGTGGAGTACGCATTGGAGAGG 1019 Query 1024 ACTCAAGTGTTGCTGTATCAAGGCATGCTGGATCTAAGAGACGGTGTCGTTTCGACGGAG 1083 |||||||| |||||||||||||| ||||| |||||||||||||| ||||||||||||||| Sbjct 1020 ACTCAAGTCTTGCTGTATCAAGGTATGCTTGATCTAAGAGACGGCGTCGTTTCGACGGAG 1079 Query 1084 GAGTGGGTGAAGACTATGAACTGGTCGGGGTTGGGGATGTTCTCGACGGCGGAGAGGAGG 1143 |||||| ||||||||||||||||||| || ||||| ||||||||||||||||||||| | Sbjct 1080 GAGTGGATGAAGACTATGAACTGGTCAGGATTGGGAATGTTCTCGACGGCGGAGAGGCGT 1139 Query 1144 GTGTGGAAGGATGAAGACGGTGCGGTCGCTGGATATGTTCAAAGATGGGGGAATTTGTGC 1203 |||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||| Sbjct 1140 GTGTGGAAGGATGAAGACGGTGTGGTCGCTGGTTATGTTCAGAGATGGGGGAATTTGTGC 1199 Query 1204 CACGTGGCGGTTTCAGGAGCTGGACATTTTGTTCCGACAGATAAAGCTGTTAATTCAAGG 1263 |||||||||||| |||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 1200 CACGTGGCGGTTACAGGAGCTGGTCATTTTGTTCCGACAGATAAAGCTGTGAATTCAAGG 1259 Query 1264 GATATGATTGAAGGCTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAATGAAGATGTGAAG 1323 |||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1260 GATATGATTGAAGGTTGGGTTTTGGGGAAAGGATTGTTCGGTGGTAA--A-GATGTGAAG 1316 Query 1324 CAGACAATTTCATCGAGCTTTTACAATTCAATCTAGATA 1362 ||||||| ||| |||||||| ||| |||||||||| ||| Sbjct 1317 CAGACAACTTCGTCGAGCTTATACCATTCAATCTAAATA 1355 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 67921337385 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5