BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920458
Length=1996
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15530.1 | Symbols: | Concanavalin A-like lectin protein ki... 3040 0.0
> AT1G15530.1 | Symbols: | Concanavalin A-like lectin protein
kinase family protein | chr1:5339961-5341931 REVERSE LENGTH=1971
Length=1971
Score = 3040 bits (1646), Expect = 0.0
Identities = 1855/1956 (95%), Gaps = 14/1956 (1%)
Strand=Plus/Plus
Query 28 GGCACTGGCCAtcccctctcctccttatcctcatctttgctgcttc-tctcctcccttcc 86
|||| |||||||||||||||||||||||||||||| | | |||| |||| || |||||
Sbjct 23 GGCAGTGGCCATCCCCTCTCCTCCTTATCCTCATC---G-TTCTTCATCTCGTCTCTTCC 78
Query 87 tcttccGCCATTGATTTTCTCTACAATTCCTTCAGCTCTGCAACCAACAGAACCGACGTA 146
|||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||
Sbjct 79 TCTTCCGCCATTGATTTTCTCTACAATTCCTTCAGCTCCGTAACTAACAGAACCGACGTA 138
Query 147 ATCCTCATCGAAGATTCCCGCGTAGACTCCACCGTGATCAGCCTCATCAACGAGTCCGAT 206
|||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 139 ATCCTCATCGAAGATTCCCGCGTAGAATCCACCGTAATCAGCCTCATCAACGACTCCGAT 198
Query 207 CCTTTCTCTTTCGGCCGTGTTTTTTACCCGCAAAAGCTCTCAATTATACCCGATCCAACA 266
|| ||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||
Sbjct 199 CCACTCTCTTTCGGCCGTGTTTTTTACCCACAAAAACTCACAATTATACCCGATCCAACC 258
Query 267 CGAAACCCGACCCGACTCTCTTCTTTCTCAACTTCTTTCGTCTTCTCCATCCTCCCTGAC 326
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||
Sbjct 259 CGAAACCCGACCCGACTCTCATCTTTCTCAACTTCCTTCGTCTTCTCCATTCTCCCTGAC 318
Query 327 ATATCCACAAGTCCCGGCTTTGGCCTCTGCTTCGTCCTCTCCAATTACACCTCTCCTCCA 386
|||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 319 ATATCCACAAGTCCTGGCTTCGGCCTCTGCTTCGTCCTCTCCAATTCCACCTCTCCTCCA 378
Query 387 AACGCTATCTCAAGCCAATACTTCGGTCTCTTCACTAATGCCACCGTCCGATTCAACGCT 446
|| |||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||||
Sbjct 379 AATGCTATCTCCAGCCAATACTTCGGTCTCTTCACTAACGCCACAGTCAGATTCAACGCT 438
Query 447 CCTCTCCTCGCCGTCGAATTCGACACCGGTCGAAACTCTGAAGTCAACGACATCGACGAT 506
|||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||
Sbjct 439 CCTCTCCTCGCCGTCGAATTCGACACCGGTAGAAACTCTGAAGTAAACGATATCGACGAT 498
Query 507 AACCACATCGGAATTGACCTTAACAACATCGAATCCACCACATCCGTAACCGCTGGCTAC 566
|||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 499 AACCACGTCGGAATTGATCTTAACAACATTGAATCCACCACATCCGTAACCGCTGGCTAC 558
Query 567 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTCAATATGCGTAACGGAAACAACGTTCGA 626
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 559 TACGATTCTGTTAATGGAAGCTTCGTTCGCTTTAATATGCGTAACGGAAACAACGTTCGA 618
Query 627 GCTTGGATCGATTTCGATGGCCCTAACTTCCAGATCAACGTTTCCGTCGCTCCCGTCGGT 686
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 619 GCTTGGATCGATTTCGATGGCCCTAACTTTCAGATCAACGTTTCCGTCGCTCCCGTCGGT 678
Query 687 GTGCTTCGACCTCGCCGGCCAACGCTTACTTTCCGTGATCCGGTTATCGCTAATTATGTC 746
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 679 GTGCTTCGACCTCGCCGGCCAACTCTTACTTTCCGTGATCCTGTTATTGCTAATTATGTC 738
Query 747 TCGGCAGATATGTATGTC-GGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCGCGAAG 805
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| |||||
Sbjct 739 TCGGCAGATATGTATG-CTGGCTTCTCTGCTTCCAAAACCAATTGGAATGAAGCTCGAAG 797
Query 806 GATTCTAGCTTGGAGCTTGAGTGATACTGGAACTCTTCGAGAGATCAACACAACCAATTT 865
||||||||||||||||||||||||||| ||| ||||||||||||||||||| || |||||
Sbjct 798 GATTCTAGCTTGGAGCTTGAGTGATACAGGAGCTCTTCGAGAGATCAACACTACGAATTT 857
Query 866 ACCTGTTTTCTTCCTGGAAAATTCTTCGTCTTCTCTTTCAACTGGAGCAATCGCCGGGAT 925
||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| |||||
Sbjct 858 ACCTGTTTTCTTCCTGGAAAACTCTTCTTCTTCTCTTTCCACTGGAGCAATCGCTGGGAT 917
Query 926 CGTTATCGGTTGTGTTGTCTTCGTAGGTCTACTTGGATTTGGGGGTTATTTGATTTGGAG 985
|||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||
Sbjct 918 CGTTATCGGTTGTGTTGTCTTCGTAGCTCTAATCGGATTTGGGGGTTATTTGATTTGGAA 977
Query 986 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1045
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 978 GAAACTAATGAGAGAGGAAGAAGAAGAAGAGATCGAGGAGTGGGAGTTAGAGTTTTGGCC 1037
Query 1046 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGGTTTCTCTAACGATCGTCT 1105
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1038 TCACCGTTTCAGCTACGAAGAACTCGCTGCAGCTACGGAGGTTTTCTCTAACGATCGTCT 1097
Query 1106 TCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1165
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1098 GCTTGGATCTGGAGGATTTGGTAAAGTTTACAGAGGAATTTTGTCAAACAACAGTGAGAT 1157
Query 1166 AGCTGTTAAATGCGTGAACCATGATTCGAAGCAAGGTTTGAGAGAATTCATGGCGGAGAT 1225
||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1158 TGCTGTTAAATGCGTGAATCACGATTCGAAGCAAGGTTTGAGAGAATTTATGGCGGAGAT 1217
Query 1226 CTCGAGTATGGGTCGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1285
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CTCGAGTATGGGTAGGTTACAGCATAAGAATCTAGTTCAAATGAGAGGATGGTGTCGCCG 1277
Query 1286 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 GAAAAACGAGCTGATGCTTGTCTACGATTACATGCCAAACGGAAGTCTTAATCAGTGGAT 1337
Query 1346 TTTTGATAACCCTAAAGAGCCAATGCCGTGGCGGAGGAGGCGTCAGGTGATTAGCGATGT 1405
|||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||
Sbjct 1338 CTTTGATAATCCTAAAGAGCCAATGCCGTGGAGGAGAAGGCGTCAGGTGATTAACGATGT 1397
Query 1406 TGCGGAAGGGCTTAACTATCTACACCATGGATGGGACCAAGTGGTGATTCACAGAGATAT 1465
||||||||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1398 TGCGGAAGGGCTTAATTATCTCCACCATGGATGGGATCAAGTGGTGATTCATAGAGATAT 1457
Query 1466 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGACTTGGGGACTTTGGTTT 1525
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1458 CAAATCAAGTAACATTCTTTTGGATTCTGAGATGCGTGGGAGGCTTGGGGACTTCGGTTT 1517
Query 1526 AGCCAAGCTGTATGAGCACGGTGGGGCTCCAAACACGACACGCGTGGTGGGCACGTTAGG 1585
||| ||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1518 AGCTAAGTTATATGAGCACGGTGGGGCTCCAAACACGACTCGCGTGGTGGGCACGTTAGG 1577
Query 1586 GTATTTGGCACCGGAGCTTGCGTTTGCGTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1645
||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 1578 GTATTTGGCTCCGGAGCTTGCGTCTGCTTCGGCGCCTACGGAGGCGAGTGATGTGTATAG 1637
Query 1646 TTTTGGTGTGGTGGTGTTGGAGGTTGTTTGTGGGAGGAGGCCGATAGAGTACGCGGAGGA 1705
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 1638 TTTTGGTGTGGTGGTGTTGGAGGTTGTTAGTGGGAGGAGACCGATAGAGTACGCGGAGGA 1697
Query 1706 GGAAGATATGGTACTTGTGGATTGGGTTAGGGATTTGTACGGCGGAGGAAGAGCGGTTGA 1765
|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 1698 GGAAGATATGGTGCTTGTGGATTGGGTTAGGGATTTGTACGGTGGAGGAAGAGTGGTTGA 1757
Query 1766 TGCGGCGGACGAGAGAGTGAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1825
||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1758 TGCAGCGGACGAGAGAGTAAGGAGCGAGTGTGAGACGATGGAGGAAGTTGAATTGTTACT 1817
Query 1826 GAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1885
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1818 CAAGTTAGGTCTGGCTTGTTGTCACCCTGATCCAGCTAAGCGGCCGAATATGAGAGAGAT 1877
Query 1886 CGTCTCACT-CTTGCTTGGCTCACCACAAGAGGATTTGTTGAC-GGGACTCACGCCGGCA 1943
||| ||||| || |||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1878 CGTTTCACTACT-GCTTGGCTCACCACAAGAGGATTTGTTGACTGGG-CTCACGCCGGCC 1935
Query 1944 GCCGCCGC---AGACTCTACGGCTGCTCACGCATGA 1976
|||||||| |||||| ||||||||||||||||||
Sbjct 1936 GCCGCCGCGGCAGACTCCACGGCTGCTCACGCATGA 1971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98895073650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5