BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920528

Length=1259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G16250.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  1938    0.0  


> AT1G16250.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr1:5556989-5559520 FORWARD LENGTH=1824
Length=1824

 Score = 1938 bits (1049),  Expect = 0.0
 Identities = 1168/1224 (95%), Gaps = 13/1224 (1%)
 Strand=Plus/Plus

Query  32    CAAGCTCGAGAAGGGGATC-GCACGATACATTTTTACAA--TCTCGCG-AC--TTCGATT  85
             |||| |||||||||||||| | | ||||||  |||||||  ||||| | ||  |||| ||
Sbjct  168   CAAGTTCGAGAAGGGGATCAG-AAGATACA--TTTACAATCTCTCGAGTACGATTCGGTT  224

Query  86    CATGGAATCAATAGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG  145
             |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  225   CATGGAATCAATCGAGCAGTCTATAATCCCAGGTTTGCCTGATGATTTGGCTTTGAGATG  284

Query  146   CATAGCGAAGCTTTCTCATGGCTATCATGGAGTGCTCGAGTGTGTTTCCAGAGGCTGGAG  205
             ||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct  285   CATAGCGAAGCTTTCTCATGGGTATCATGGAGTGCTCGAATGTGTTTCCAGAGGCTGGAG  344

Query  206   AGATTTAGTTCGTAGCGTTGATTACTCTTGCTATAAAGCTAGAAATGGATGGTCAGGGAG  265
             ||||||||||||| | | ||||||||| ||||||||||||||||||||||||||||||||
Sbjct  345   AGATTTAGTTCGTGGTGCTGATTACTCGTGCTATAAAGCTAGAAATGGATGGTCAGGGAG  404

Query  266   CTGGTTGTTTGTCTTGACAGAACGTTCTAAGAACCAATGGGTTGCTTATGATCCTCAAGC  325
             |||||||||||| ||||| |||||||||||||| || |||||||||||||||||| ||||
Sbjct  405   CTGGTTGTTTGTGTTGACGGAACGTTCTAAGAATCAGTGGGTTGCTTATGATCCTGAAGC  464

Query  326   TGATCGATGGCATCCTTTGCCTAGAACTAGGGCTGTTCAAGATGGTTGGCATCATTCTGG  385
             ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct  465   TGATCGATGGCATCCATTGCCTAGAACTAGAGCTGTTCAAGATGGTTGGCATCATTCTGG  524

Query  386   TTTTGCGTGTGTTTGCGTTTCGAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC  445
             ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  525   TTTTGCGTGTGTTTGTGTTTCCAATTGTCTTCTTGTGATTGGGGGTTGTTATGCGCCTTC  584

Query  446   TGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC  505
              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  585   GGTGTCATCGTTTCCTCATCAGAAGCCTGTTGTCACTAAAGATGTCATGCGGTTTGATCC  644

Query  506   GTTTAAGAAAGAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG  565
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  645   GTTTAAGAAACAATGGAAAATGGTTGCTAGTATGCGAACACCACGGACTCACTTTGCTTG  704

Query  566   CACTGCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGCAATTTAACCCATTCCAGGGG  625
              ||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct  705   TACTTCTGTCTCTGGCAAGGTTTATGTTGCTGGAGGTCGTAATTTAACTCATTCCAGGGG  764

Query  626   AATTCCC-TCTGCTGAGGTTTATGATCCTGTGGCTGATAGATGGGAGGAATTACCAGCAA  684
             || |||| ||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct  765   AA-TCCCATCTGCTGAGGTTTATGATCCTGTCGCTGATAGGTGGGAGGAATTACCAGCAA  823

Query  685   TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGTTGCTTTCATGTTCTGA  744
             ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct  824   TGCCTAGACCACAGATGGACTGCTCGGGGTTATCGTACAGAGGCTGCTTTCATGTTTTAA  883

Query  745   GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA  804
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  884   GTGACCAGGTGGGATTTGCAGAGCAAAATTCATCTGAAGTTTTTAATCCACGAGACATGA  943

Query  805   CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG  864
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  944   CTTGGTCCACTGTGGAGGATGTCTGGCCTTTCTCTAGAGCCATGCAGTTTGCTGTTCAGG  1003

Query  865   TGATGAAAAATGATCGAGTGTACACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA  924
             |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct  1004  TGATGAAAAATGATCGGGTGTATACTATTGTAGATTGGGGAGAAAGCTTGATCAAGACTA  1063

Query  925   GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA  984
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1064  GGGATACAGATGAAGGGGAATGGTACAATGTTGGTTCAGTTCCTTCTGTTGTTCTTCCTA  1123

Query  985   ATCATCCGAGAGAGTTAGAGGCCTTTGGTTATGGGTTTGCAGCTCTAAGGGATGAGCTCT  1044
             ||||||||||||||||||| ||||| |||||||||||||||||||||||| |||| ||||
Sbjct  1124  ATCATCCGAGAGAGTTAGAAGCCTTCGGTTATGGGTTTGCAGCTCTAAGGAATGAACTCT  1183

Query  1045  ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG  1104
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1184  ATGTTATAGGAGGTAAGGTCCTTAAATGGGAAGAATCAGGGGCAGGGAGATTTGACATTG  1243

Query  1105  TGAGATTGCCCGTTGTGAGGGTATGTAACCCTTTGGATAGGCCTCTGAATTGGAGAGAGA  1164
             |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  1244  TGAGATTGCCTGTTGTGAGGGTATGTAACCCTTTGGATAGACCTCTGAATTGGAGAGAGA  1303

Query  1165  CCAAACCGATGTGCATTCCAGCCGGTGGGTCCATCATTGGTTGTGTATCCTTGGAAGAAT  1224
             ||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct  1304  CCAAACCAATGTGCATTCCAGCCGGTGGGTCGATCATTGGTTGTGTATCCTTGGAAGAAT  1363

Query  1225  CTTCTCCGCTTTAAACCAAG-GTG  1247
             ||||||| | |||| ||||| |||
Sbjct  1364  CTTCTCCCCCTTAA-CCAAGTGTG  1386



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61897271985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5