BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920567
Length=2353
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79090.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 1242 0.0
> AT1G79090.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant structures;
EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s:
Topoisomerase II-associated protein PAT1 (InterPro:IPR019167);
BEST Arabidopsis thaliana protein match is: Topoisomerase
II-associated protein PAT1 (TAIR:AT3G22270.1); Has 30201
Blast hits to 17322 proteins in 780 species: Archae - 12;
Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants -
5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
| chr1:29749127-29753307 REVERSE LENGTH=3000
Length=3000
Score = 1242 bits (672), Expect = 0.0
Identities = 1428/1781 (80%), Gaps = 100/1781 (6%)
Strand=Plus/Plus
Query 548 ACCAGATCAGCATTTTGGACAACCAAATACACAATTTCATTCTGATGGGTCTCATATCGG 607
||||||||||| ||| ||||| || |||| || || ||| |||| |||| |||| || ||
Sbjct 908 ACCAGATCAGCGTTTAGGACACCCTAATATACCATATCAATCTGGTGGGCCTCAAATGGG 967
Query 608 ATCGCCAAATC-TCTCTCCATTTCCAAGTTCT-CATCCTCAGTTGGTTGGCA--C-GCAT 662
||||||||| | | ||||| ||||||| || | || ||||||||| | ||| | |||
Sbjct 968 ATCGCCAAA-CTTTTCTCCTTTTCCAAATT-TGCAGCCTCAGTTGCCTAGCATGCATCAT 1025
Query 663 GGGTCACCGCA-AATCACTGGAAACATGCCACAGTTTCGACCTTCTCTTCCTGGGAACAA 721
|| |||||||| || |||||||||| ||| |||||||| ||| |||||||| ||| ||
Sbjct 1026 GGATCACCGCAGCAT-ACTGGAAACAGGCCTCAGTTTCGTCCTGCTCTTCCTCTGAATAA 1084
Query 722 TCGCCCCCCAGCTCAATGGATGAATGGCCAAAATATGTTTCCTGGAGATAGTTCTGGGAT 781
|| ||| |||||||||||||||||| | ||||||||| |||||| |||||||| |||||
Sbjct 1085 TCTCCCTCCAGCTCAATGGATGAATCGTCAAAATATGCATCCTGGGGATAGTTCCGGGAT 1144
Query 782 CATGAACAACATGTTACCACAACAGCAGTTACCTCATCAAAACGGTCTAATGCCTCAACA 841
|||||| || | | | |||||||| | ||||||||||||||| | ||||||| ||
Sbjct 1145 CATGAATAATGCGATGCTACAACAGC--CT-CCTCATCAAAACGGTTTGATGCCTC--CA 1199
Query 842 GCAGCGGATGCCTCAGATGCAGGTTCCTCAGAATAGGTTAGTACATCCGATGCAG-C-CC 899
|| |||| | | | || | |||||||||||||| ||||||||||||| | ||
Sbjct 1200 -CA---GATG---C--A-G--GGCT-CTCAGAATAGGTTACCACATCCGATGCAGCCTCC 1246
Query 900 -CACGGGCATTTGTCAGGAATGCAGCCTCAACTATTTAATTCCAACCTTTCTCGGTCAGC 958
| ||||||| || |||||||||||||||| ||||||||||| | |||||||| ||| |
Sbjct 1247 TCTCGGGCATATGCCAGGAATGCAGCCTCAGTTATTTAATTCCCATCTTTCTCGATCATC 1306
Query 959 ATCCTCGGGCAGTTATGATGCAATGCTTGGGTTTGGTGATCTGAGGGAAGCAAGACCAGG 1018
|||||| || | |||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1307 ATCCTCTGGAAATTATGATGGAATGCTTGGGTTTGGTGATCTGAGGGAAGTAAGACCAGG 1366
Query 1019 ATCGA-GTCATGGGAACAGACAAAACATGCGCTTTCTTCAACAGGGTTTTGATGGTGGAC 1077
||| | |||||||||||||||| || |||| |||| ||||| || ||||||| ||| |
Sbjct 1367 ATC-AGGTCATGGGAACAGACAGAATGTGCGTTTTCCCCAACAAGGCTTTGATGCTGG-C 1424
Query 1078 -TTCAGAGGAGAAATAATGCATGGCCTCCTTTCCGGTCGAAATATATGACAGCTGTTGAA 1136
||| | ||| || | || ||| |||||||| ||||||||| |||||| |||
Sbjct 1425 GTTC--A-GAG----AA-G-AT---ATCCATTCCGGTCTAAATATATGTCAGCTGGTGAG 1472
Query 1137 ATAGAGAACATCCTAAGAATGCAACTTGTGGCTACCCATAGCAATGATCCTTATGTAGAT 1196
|||||||| || || |||||||| ||||| ||||| || ||||||||||||||||| |||
Sbjct 1473 ATAGAGAATATACTGAGAATGCAGCTTGTTGCTACACACAGCAATGATCCTTATGTTGAT 1532
Query 1197 GATTATTACCACCAGGCATGTCTTGCTAAGAAATCTGCTGGTGCAAAACTGAAGCATCAT 1256
||||| || ||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1533 GATTACTATCACCAAGCCTGTCTTGCTAAGAAATCTGCAGGTGCAAAACTGAAGCATCAT 1592
Query 1257 TTCTGTCCAAATCATTTGAGAGACCTTCCATCT-CGTGCCCG-TCCTAACAATGAGCCCC 1314
|||||||||||||||||||| ||||||| | | ||||| || || ||||| |||||||
Sbjct 1593 TTCTGTCCAAATCATTTGAGGGACCTTCAA-CAGCGTGCACGGTCG-AACAACGAGCCCC 1650
Query 1315 ACGCATTTCTTCAGGTTGATGCTCTTGGTAGAGTTCCTTTCTCTTCGATCCGCAGGCCTC 1374
| || |||||||||||||| ||||||||||| |||||||||||||| |||||||||||||
Sbjct 1651 ATGCTTTTCTTCAGGTTGAGGCTCTTGGTAGGGTTCCTTTCTCTTCAATCCGCAGGCCTC 1710
Query 1375 GGCCTCTGCTTGAAATGGATCCTCCAAATTCAACAAAATCTGGTAAT-CTAGAGCAGAAA 1433
| |||||||||||| |||| |||||||||||| | |||| ||||||| | |||||| |||
Sbjct 1711 GTCCTCTGCTTGAAGTGGACCCTCCAAATTCAGCTAAATTTGGTAATGC-AGAGCATAAA 1769
Query 1434 GATACAGACAAGCCCCTTGAACAAGAGCCAATGCTTGCAGCTAGGGTG-ATTATTGAGGA 1492
||| || ||||||||||| |||||||| |||||||||||||| ||| | ||||||||
Sbjct 1770 CCTACGGATAAGCCCCTTGATCAAGAGCCGATGCTTGCAGCTAGAGTGTAC-ATTGAGGA 1828
Query 1493 AGGTCTATACCTCTTCCTTGAGGTAGATGATATTGACCGGTTCTTAGAGTTCAATAAACT 1552
||||| | ||| ||||||| || |||||||| || || ||||| ||||| || ||||
Sbjct 1829 TGGTCTTTGTCTCCTCCTTGAAGTTGATGATATAGATCGTTTCTTGGAGTTTAACCAACT 1888
Query 1553 CCAAGATGGTGGAAACCAGTTGAGGCAAA-AGCGGCAAGC-TCTGTTGGATGGGC-TTGC 1609
||| || || ||| ||||||||| |||| | || ||||| | ||||| | | || ||||
Sbjct 1889 CCAGGACGGAGGACACCAGTTGAAACAAAGA-CGACAAGCAT-TGTTGCA-GAGCCTTGC 1945
Query 1610 AGTGTCACTGCAGCTTGTTGA-CCCACTTGGTAAGAACGGGCAAAAC-AGTGGGCTTGCA 1667
|| ||||| ||||| | ||| ||| || | ||||| ||||||| | ||| |||| |
Sbjct 1946 GGTTTCACTTCAGCTCGGTGATCCC-CTCGCCAAGAATGGGCAAAGCCAGTCT-CTTG-A 2002
Query 1668 TTTCAGGATCTTGTCTTTCTAAGAATTACCTCCCTTCGAAAGGGCCGGAAGCTACTTACA 1727
| | || || |||||||||| ||| ||| |||| |||||| || |||||||||| |
Sbjct 2003 T----G-ATTTTCTCTTTCTAAGGGTTATCTCTCTTCCAAAGGGTCGAAAGCTACTTATA 2057
Query 1728 AGGTACCTCCAGCTTCTTTTCCCTGGCAGCGATCC-AATGCGAATTGTTTGCATGGCTAT 1786
||||| || ||||| |||||||||||||||| || |||||| || ||||||||||| ||
Sbjct 2058 AGGTATCTTCAGCTAATTTTCCCTGGCAGCGA-CCTAATGCGGATAGTTTGCATGGCCAT 2116
Query 1787 TTTTAGACACTTAAGGTCTTTGTTTGGAGTGCGATCATCAGATACTGAAACCA-CAAAAA 1845
||| | || |||||||| ||||| ||||| | ||||| || | || | || |||||
Sbjct 2117 TTTCCGTCATTTAAGGTCATTGTTCGGAGTCCTTTCATCTGACCCCGATATCATCAAAA- 2175
Query 1846 CCACAA-TCAAACTTGCAAAAGTTGTCG-CTTTATGCATTCAGACCATGGATCTT-GGAC 1902
|||||| | || ||||||| |||| || ||| |||||||| | |||||| || ||||
Sbjct 2176 CCACAAAT-AAGCTTGCAACAGTTATCAACTTG-TGCATTCAAAACATGGAG-TTAGGAC 2232
Query 1903 CCGTAAGC-CTGTGTCTAGCAGCAGTTTCTTGTTCTTCTGAGCAGCCACCGCTTCGTCCT 1961
| |||||| | |||||||||||| || |||||||||||||||||| ||||||| || ||
Sbjct 2233 CGGTAAGCAC-GTGTCTAGCAGCGGTGTCTTGTTCTTCTGAGCAGGCACCGCTCCGCCCC 2291
Query 1962 TTGGGTAGTCCTGTCGGAGACGAAGCTACCATTA-TACTCAAATCTGCACTCGATAGAGC 2020
|| || |||||||| ||||||| |||| ||| | || | ||||| |||||| |||||
Sbjct 2292 TTAGGCAGTCCTGTTGGAGACGGAGCTTCCAC-AGTATTGAAATCAATACTCGACAGAGC 2350
Query 2021 TACCGAGCTTCTCCGTGCTAATAATTACAACAACTCAGGCAT-GAATCTGTGGCGTGCTT 2079
| |||||||| |||| |||||||||| ||||||| |||| || | ||| ||||| ||||
Sbjct 2351 TTCCGAGCTTATCCGGGCTAATAATTTCAACAACGCAGGGATAGC-TCTATGGCGCGCTT 2409
Query 2080 CCTTTGATGAGTTCTTCAACT-TACTGATGAAACACTGCATAAGCAAGTACGACAGTATA 2138
||||| |||||||||| || | | |||||| ||||||| ||||| ||||| || ||
Sbjct 2410 CCTTTAATGAGTTCTTTAA-TATGTTGATGAGGTACTGCATCAGCAAATACGATAGCATC 2468
Query 2139 ATGCAGAACCTGAATTCGCAATTGCCACCACACTTTGCCACAGAGATATCTGAAGCTGCT 2198
||||||| | || |||||||||||| || |||||||| ||||||||||||| |||
Sbjct 2469 ATGCAGAG--T---TT-GCAATTGCCACCGCATTTTGCCACTGAGATATCTGAAGAAGCT 2522
Query 2199 GCACAAGCCATTGTCAGGGAAATGCCTATCGAGCTTCTACGAGCGAGTTTCCCGCACATA 2258
||| ||||||||||| | |||||||| || ||||||||||| | |||||||| |||||
Sbjct 2523 GCAAAAGCCATTGTCCGCGAAATGCCAATAGAGCTTCTACGTTCAAGTTTCCCACACATT 2582
Query 2259 -AGCGATG-AGCAAAAGAGAATACTTG-TGGAATTCTTGAA 2296
| || | |||||||||| ||||| | |||| || |||||
Sbjct 2583 GAT-GA-GCAGCAAAAGAGGATACT-GATGGAGTTTTTGAA 2620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 116816668215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5