BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920595
Length=567
Score E
Sequences producing significant alignments: (Bits) Value
AT1G16890.3 | Symbols: UBC36 | ubiquitin-conjugating enzyme 36 ... 797 0.0
AT1G78870.1 | Symbols: UBC35, UBC13A | ubiquitin-conjugating en... 601 3e-171
> AT1G16890.3 | Symbols: UBC36 | ubiquitin-conjugating enzyme 36
| chr1:5776177-5778484 REVERSE LENGTH=1019
Length=1019
Score = 797 bits (431), Expect = 0.0
Identities = 547/597 (92%), Gaps = 31/597 (5%)
Strand=Plus/Plus
Query 1 CGATTATCATCAGCCTTTGCCAGCTTCGTTCTCTCTCAAAAACCCTAACTTCTCTGAGAC 60
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 74 CGATTATTATCAGCCTTTGGTAGCTTCGTTCTCTCTCAAAAACCCTAACTTCTCTGTGA- 132
Query 61 CGATCGAATCCGGTAGCGTGCGATAATGGCCAATAGTAATCTTCCCCGAAGAATCATCAA 120
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 133 CGATCGAATCCGATAGCGTGCGATAATGGCCAATAGTAATCTTCCCCGACGAATCATCAA 192
Query 121 GG--A---AA---CT-C------AA-C--G-----TC-T-GCTT-AGT-GAGCCTGCTCC 153
|| | || || | || | | || | ||| | | || ||| ||||
Sbjct 193 GGAAACTCAACGTCTGCTTAGTGAACCTGGTAATTTCATCACTTCATTCGATCCTTCTCC 252
Query 154 TGGGATAAGTGCGTCTCCATCAGAGGAAAATATGCGATATTTCAATGTTATGATTCTTGG 213
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 253 TGGGATAAGTGCGTCTCCATCAGAGGAAAATATGAGATATTTCAATGTTATGATTCTTGG 312
Query 214 TCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGA 273
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 313 TCCTACTCAATCTCCTTATGAAGGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAAGA 372
Query 274 ATATCCCATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATATACCATCCTAACATCGA 333
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 373 ATATCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATTTACCATCCTAACATCGA 432
Query 334 CAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACAAAT 393
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 CAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACAAAT 492
Query 394 ACGTACTGTGCTCTTGAGTATCCAAGCTCTTCTAAGTGCACCAAATCCAGATGATCCTCT 453
||| ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 493 ACGAACTGTGCTCTTGAGTATCCAAGCTCTTTTAAGTGCACCAAACCCAGATGATCCTCT 552
Query 454 GTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAAGCAGAAGCTGTGGAAACAGCTAA 513
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 553 GTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAGGCAGAAGCTGTGGAAACAGCTAA 612
Query 514 GGAATGGACTCGTCTTTACGCAAGTGGTGCTTGA-G--GATTGCAAATGGAGAAAGA 567
|||||||||||||||||||||||||||||||| | | || ||||||||||||||||
Sbjct 613 GGAATGGACTCGTCTTTACGCAAGTGGTGCTTAAAGAAGACTGCAAATGGAGAAAGA 669
> AT1G78870.1 | Symbols: UBC35, UBC13A | ubiquitin-conjugating
enzyme 35 | chr1:29650463-29652517 FORWARD LENGTH=905
Length=905
Score = 601 bits (325), Expect = 3e-171
Identities = 456/517 (88%), Gaps = 17/517 (3%)
Strand=Plus/Plus
Query 36 TCAAAAACCCTAACTTCTCTGAGACCGATCGAATCCGGTAGCGTGCGATAATGGCCAATA 95
|||||||||||||| |||||||| | ||| || | | | | | |||||||||||| |
Sbjct 87 TCAAAAACCCTAAC-TCTCTGAG--C--TCG-AT-C-G-A-CAAGTGATAATGGCCAACA 136
Query 96 GTAATCTT-CCCCGAAGAATCATCAAGGAAACTCAACGTCTGCTTAGTGAGCCTGCTCCT 154
||||| || || |||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 137 GTAAT-TTGCCGCGAAGAATCATCAAGGAAACTCAACGTCTGCTCAGTGAACCGGCTCCC 195
Query 155 GGGATAAGTGCGTCTCCATCAGAGGAAAATATGCGATATTTCAATGTTATGATTCTTGGT 214
|| |||||||| |||||||| ||||| |||||||| |||||||| |||||||||||||||
Sbjct 196 GGTATAAGTGCCTCTCCATCTGAGGATAATATGCGGTATTTCAACGTTATGATTCTTGGT 255
Query 215 CCTACTCAATCTCCTTATGAA-G--GAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAA 271
||||| ||||| ||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 256 CCTACACAATCACCTTATGAAGGTAGAGGAGTTTTCAAGTTGGAGCTCTTTTTGCCTGAA 315
Query 272 GAATATCCC-ATGGCAGCTCCCAAGGTTAGGTTTCTCACCAAGATATACCATCCTAACAT 330
||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 316 GAATA-CCCTATGGCAGCTCCCAAGGTTAGGTTTCTCACAAAGATATACCATCCTAACAT 374
Query 331 CGACAAGCTTGGAAGAATCTGCCTTGACATACTGAAAGACAAGTGGAGTCCTGCACTACA 390
|||||||||||||||||||| ||||| || || || ||||| ||||| |||||||||||
Sbjct 375 TGACAAGCTTGGAAGAATCTGTCTTGATATTCTCAAGGACAAATGGAGCCCTGCACTACA 434
Query 391 AATACGTACTGTGCTCTTGAGTATCCAAGCTCTTCTAAGTGCACCAAATCCAGATGATCC 450
|||||| || |||||||| ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 435 AATACGAACAGTGCTCTTAAGTATTCAAGCTCTTCTGAGTGCACCAAACCCAGATGATCC 494
Query 451 TCTGTCTGAGAACATAGCTAAGCATTGGAAGAGCAATGAAGCAGAAGCTGTGGAAACAGC 510
|| ||||||||||| |||||||| |||||||| ||||| |||||||||||||| |||||
Sbjct 495 GCTTTCTGAGAACATTGCTAAGCACTGGAAGAGTAATGAGGCAGAAGCTGTGGATACAGC 554
Query 511 TAAGGAATGGACTCGTCTTTACGCAAGTGGTGCTTGA 547
|||||||||||| |||||||| ||||| || || |||
Sbjct 555 TAAGGAATGGACCCGTCTTTATGCAAGCGGCGCATGA 591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27226907674
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5