BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920711
Length=631
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17860.1 | Symbols: | Kunitz family trypsin and protease in... 867 0.0
> AT1G17860.1 | Symbols: | Kunitz family trypsin and protease
inhibitor protein | chr1:6149301-6150038 FORWARD LENGTH=738
Length=738
Score = 867 bits (469), Expect = 0.0
Identities = 565/612 (92%), Gaps = 4/612 (1%)
Strand=Plus/Plus
Query 3 AAAAGAAATCTTCCTACAATGTCCTCACTTCTCTATATCTTCCTCCTCTTTGCCGTCTTT 62
|||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 25 AAAAGAAAACTTCCTACAATGTCATCACTTCTCTATATCTTCCTCCTCTTGGCCGTCTTC 84
Query 63 ACCAGCCACCGTGGAGCCACCACCGAAGCTGCCGTCGAACCAGTTAAGGACATCAATGGA 122
| |||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 85 ATCAGCCACCGTGGAGTCACCACCGAAGCAGCCGTCGAACCAGTTAAGGACATCAATGGA 144
Query 123 AAACCTCTCCTAAC-GAAGTACAACTACTACATCTTGCCTGTAGTTCGCGGCCGCGGAGG 181
||| ||||||| || | || |||||||||||||||||||||| |||||||||| |||||
Sbjct 145 AAATCTCTCCTCACAGGCGT-CAACTACTACATCTTGCCTGTAATTCGCGGCCGTGGAGG 203
Query 182 CGGATTAACCATGTCCAACTTCAAA-AACGAAACCTGTCCGAGAAGTGTGATCCAAGACC 240
|||| |||||||||| ||||| ||| | |||||||||||| | |||||||||||||||||
Sbjct 204 CGGACTAACCATGTCAAACTT-AAAGACCGAAACCTGTCCCACAAGTGTGATCCAAGACC 262
Query 241 AGTTCGAAGTCTCTCAAGGCTTACCAGTTAAATTCTCACCATATGACAAATCAAGTATCG 300
| || ||||||||||||||| |||| ||||||||||||||||||||||||||||| | |
Sbjct 263 AATTTGAAGTCTCTCAAGGCCTACCGGTTAAATTCTCACCATATGACAAATCAAGAACCA 322
Query 301 TCCGTGTCTCAACCGATCAAAACATCAAGTTCTCTCCAACCTCGATATGGGAATTAGCCA 360
||| ||||||||| ||| ||||||||| ||||||||||| ||||| |||||||||||||
Sbjct 323 TCCCTGTCTCAACTGATGTAAACATCAAATTCTCTCCAACTTCGATCTGGGAATTAGCCA 382
Query 361 ATTTCGACGAGAGGACGAGTCAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCGG 420
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 383 ATTTCGACGAGACGACGAAACAATGGTTCATTTCAACTTGTGGCGTTGAAGGGAATCCCG 442
Query 421 GTCAGAAAACAGTTGGTAACTGGTTTAAGATCGACGAATTTGAAAAAGATTACAAGATCA 480
|||||||||| |||| ||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 443 GTCAGAAAACGGTTGATAACTGGTTCAAGATCGACAAATTTGAAAAAGATTACAAGATCA 502
Query 481 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 503 GGTTTTGTCCTACTGTCTGCAATTTCTGCAAAGTCATCTGTAGAGACGTTGGAGTGTTTG 562
Query 541 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGAGGTTCCATTAAAGGTTATGTTCAAAA 600
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 563 TGCAAGATGGAAAGAGAAGACTTGCTTTAAGTGATGTTCCACTAAAGGTTATGTTCAAAA 622
Query 601 AAGCATACTAGA 612
|||||||||||
Sbjct 623 GAGCATACTAGA 634
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30441893082
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5