BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920712
Length=1762
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17870.1 | Symbols: ATEGY3, EGY3 | ethylene-dependent gravit... 2697 0.0
> AT1G17870.1 | Symbols: ATEGY3, EGY3 | ethylene-dependent gravitropism-deficient
and yellow-green-like 3 | chr1:6149939-6152222
REVERSE LENGTH=1856
Length=1856
Score = 2697 bits (1460), Expect = 0.0
Identities = 1668/1769 (94%), Gaps = 12/1769 (1%)
Strand=Plus/Plus
Query 1 TTTCTGAGTTTTCGTAAACCATGGCTTCTCTCTTTGTATCTACTCCCTCACCTTCCTTGG 60
||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 18 TTTCTGAGTTTTCGTAAACCATGGCTTCTCTCTTTGTTTCTACTCCATCATCTTCCTTAA 77
Query 61 CTCTCAAATCCTGTCACAATTTGCGTCTTCGTCGCTTTGACAGTCCCA-TA-TTTCAGAA 118
|||| ||||||||||||| ||||| |||||||||||||||||| || | |||| |||
Sbjct 78 CTCTTAAATCCTGTCACAGTTTGCATCTTCGTCGCTTTGACAG-AGCAGAATTTTC-GAA 135
Query 119 ATTTGGAAAAGCTTATGTGAATCAGACAAGGAGAAGCAGA-AATCTTTTGAGATGTTCAG 177
||||| ||||||| |||||||||||||| |||||||||| | || ||||||||||||||
Sbjct 136 CTTTGGGAAAGCTTCTGTGAATCAGACAACGAGAAGCAGACATTC-TTTGAGATGTTCAG 194
Query 178 CTGAAGATGATCGAGTTCGTGAACCTGTGAAGGAAGCTTCGTCTCCGGTGGCGATAGCGG 237
| ||||||||||| ||||||||||||||||| |||||| | |||||||||||| ||||||
Sbjct 195 CGGAAGATGATCGCGTTCGTGAACCTGTGAACGAAGCTCCTTCTCCGGTGGCGTTAGCGG 254
Query 238 AGGAGC-AAAAGGAGAACCACGCGAGCAATAATGCGCCGCCTTCTCCAGAAAGCAGTGAA 296
|||||| ||||| || |||||| | |||||||||||||||||||||||| |||||||||
Sbjct 255 AGGAGCAAAAAGAAG-ACCACGATAACAATAATGCGCCGCCTTCTCCAGAGAGCAGTGAA 313
Query 297 GAGGAGGAGGAAAAGAAATCAAAGCAGCAAGAGATGGACTGGAAAACGGATGAGGAGTTC 356
|| |||||||||||||| || ||||||||||||||||| |||||||| || |||||||||
Sbjct 314 GAAGAGGAGGAAAAGAAGTCGAAGCAGCAAGAGATGGATTGGAAAACAGACGAGGAGTTC 373
Query 357 AAGAAGTTTATGGGAAATCCATCAATCGAAGCTGCTATAAAGCTTGAGAAGACGAGAACT 416
|||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 374 AAGAAGTTTATGGGGAATCCATCTATCGAAGCTGCGATAAAGCTTGAGAAGACGAGAACT 433
Query 417 GATCGTAAGCTCAAGGAGCTGAACAAGGAAAGCAACAGTCAGAATCCGATCATCGGAATT 476
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 434 GATCGTAAGCTCAAGGAGCTGAACAAGGAAAGCAACAGTGAGAATCCGATCATTGGAATT 493
Query 477 TTGAACAGCTTGGCTCGTGATACTTTGACTAGAGAGAAAGAAAGACTTGAGAAAGCAGAA 536
| ||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||
Sbjct 494 TACAACAGCTTGGCTCGTGATAGTTTGACTAAAGAGAAAGAAAGGCTTGAGAAAGCAGAA 553
Query 537 GAGACTTTCAAGGCTCTTGATCTCAACAAGTTGAAGAGCTGTTTTGGGTTCGATACGTTT 596
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 554 GAGACTTTCAAGGCTCTTGATCTCAACAAGTTGAAGAGCTGTTTTGGGTTCGATACATTT 613
Query 597 TTTGCTACGGACGTTCGTCGGTTTGGAGATGGAGGAATCTTCATTGGGAATCTCAGAAAA 656
|| |||||||| ||||| |||||||||||||||||||||||||||||||| || ||||||
Sbjct 614 TTCGCTACGGATGTTCGCCGGTTTGGAGATGGAGGAATCTTCATTGGGAACCTGAGAAAA 673
Query 657 CCCATTGATGAGGTCACACCTAAGCTTGAAGCTAAGCTATCTGAAGCAGCTGGGCGTGAT 716
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CCCATTGATGAAGTCACACCTAAGCTTGAAGCTAAGCTATCTGAAGCAGCTGGGCGTGAT 733
Query 717 GTTGTTGTGTGGTTTATGGAAGAAAGGTCCAATGAGATCACAAAACAGGTGTGTATGGTG 776
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 734 GTTGTTGTGTGGTTTATGGAAGAAAGGTCCAATGAGATCACAAAGCAGGTGTGTATGGTG 793
Query 777 CAACCGAAGGCGGAAATCGATTTACAATTTGAATCGACTAGATTAAGCACTCCTTGGGGA 836
|| |||||||||||||| ||| |||| |||||||| ||||||||||||||||||||||||
Sbjct 794 CAGCCGAAGGCGGAAATTGATCTACAGTTTGAATCAACTAGATTAAGCACTCCTTGGGGA 853
Query 837 TATGTTAGTGCAATTGCTTTATGTGTTACAACCTTTGGAACCATAGCGCTTATGAGTGGG 896
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 854 TATGTTAGTGCAATTGCTTTATGTGTTACAACCTTTGGAACCATAGCTCTTATGAGTGGG 913
Query 897 TTTTTCCTTAAACCTGACGCCACTTTTGATGACTACATTGCTAATGTAGTTCCTCTTTTT 956
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 914 TTTTTCCTGAAACCCGACGCCACTTTTGATGACTACATTGCTAATGTAGTTCCTCTTTTT 973
Query 957 GGCGGGTTCCTTTCCATCTTAGGCGTCTCAGAGATTGCAACCAGAGTAACCGCTGCGCGA 1016
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 974 GGCGGGTTCCTTTCCATCTTAGGTGTCTCAGAGATAGCAACTAGAGTAACCGCTGCGCGA 1033
Query 1017 CACGGTGTCAGATTAAGCCCATCGTTTCTGGTGCCATCGAATTGGACTGGTTGCTTAGGA 1076
|||||||||| ||||||||| |||||||| |||||||| |||||||||||||||||||||
Sbjct 1034 CACGGTGTCAAATTAAGCCCGTCGTTTCTTGTGCCATCAAATTGGACTGGTTGCTTAGGA 1093
Query 1077 GTTATGAACAATTACGAGTCATTGCTTCCTAATAAAAAGGCGTTATTCGATATCCCAGTA 1136
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1094 GTTATGAACAATTATGAGTCATTGCTTCCTAATAAAAAGGCGTTATTCGACATCCCAGTA 1153
Query 1137 GCCCGTACAGCTAGCGCGTACCTGACCTCGCTTCTGCTTGCAGCAGCTGCGTTTATATCT 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1154 GCCCGTACAGCTAGCGCGTACCTGACCTCGCTTCTGCTTGCAGCAGCTGCGTTTATATCT 1213
Query 1197 GATGGTAGTTTCAATGGAGGAGACAATGCTTTGTATATAAGACCACAGTT-TTTCGATAA 1255
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||| || ||
Sbjct 1214 GATGGTAGTTTCAATGGAGGTGACAATGCTTTGTATATAAGACCACAGTTCTTT-GACAA 1272
Query 1256 TAACCCGTTGCTTTCGTTTGTCCAATTCGTTGTTGGTCCTTATGCGGATGATCTTGGTAA 1315
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TAACCCGTTGCTTTCATTTGTCCAATTCGTTGTTGGTCCTTATGCGGATGATCTTGGTAA 1332
Query 1316 TGTATTGCCTAACGCGGTTGAAGGAGTTGGTGTTCCAGTTGATCCGCTTGCTTTCGCTGG 1375
|||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1333 TGTATTACCTAATGCGGTTGAAGGAGTTGGTGTTCCAGTTGATCCGCTCGCTTTCGCTGG 1392
Query 1376 TCTTTTGGGTATGGTAGTGACTTCATTGAACTTATTACCATGTGGAAGACTCGAAGGAGG 1435
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1393 TCTTTTGGGTATGGTAGTGACTTCATTGAACTTATTACCATGTGGAAGACTTGAAGGAGG 1452
Query 1436 TCGAATCGCTCAAGCCATGTTTGGAAGAAGCACAGCTGCAATTCTCTCATTTACCACATC 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1453 TCGAATCGCTCAAGCCATGTTTGGAAGAAGCACAGCTGCAATTCTCTCATTTACCACATC 1512
Query 1496 ACTCCTTCTCGGTATAGGAGGTCTCAGCGGAAGCGTCTTATGTTTAGCTTGGGGGCTATT 1555
||||||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1513 ACTCCTTCTTGGTATCGGAGGTCTCAGCGGAAGCGTCTTGTGTTTAGCTTGGGGGCTATT 1572
Query 1556 CGCAACCTTCTTCCGCGGAGGTGAAGAAACACCCGCGAAAGACGAAATCACCCCCCTAGG 1615
|||||||||||||||||| || |||||||||||||| |||||||||||||| || ||||
Sbjct 1573 CGCAACCTTCTTCCGCGGTGGCGAAGAAACACCCGCAAAAGACGAAATCACACCTGTAGG 1632
Query 1616 CGACGATAGGTTCGCTTGGGGTATAGTCCTTGGACTCATATGCTTCCTCACTCTCTTTCC 1675
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1633 GGACGATAGGTTCGCTTGGGGTATAGTCCTTGGACTCATTTGCTTCCTCACTCTATTTCC 1692
Query 1676 TAACAGCGGAGGTACTTTCTCCACTTCATTCTTCAATGGACCTTTCTTCCGTGGTGATGA 1735
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1693 TAACAGTGGAGGTACTTTCTCCACTTCATTCTTCAATGGACCTTTCTTCCGTGGTGATGA 1752
Query 1736 TTTCTAAAGAATGTA--GATTAAGTTGCA 1762
||||||||||||||| ||||||| ||||
Sbjct 1753 TTTCTAAAGAATGTATAGATTAAGATGCA 1781
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87148146120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5