BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg920718

Length=1259
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G17940.1 | Symbols:  | Endosomal targeting BRO1-like domain-...  2093    0.0  
  AT1G73390.1 | Symbols:  | Endosomal targeting BRO1-like domain-...  1380    0.0  


> AT1G17940.1 | Symbols:  | Endosomal targeting BRO1-like domain-containing 
protein | chr1:6169341-6173222 REVERSE LENGTH=1734
Length=1734

 Score = 2093 bits (1133),  Expect = 0.0
 Identities = 1218/1260 (97%), Gaps = 2/1260 (0%)
 Strand=Plus/Plus

Query  1     TTTCTTAAGCTCTGTTG-AAAATGGGATGCTTTGCATCAACACCGAAAGACTCTGGTGGG  59
             ||||||||| |||| || ||||||||||||||||| ||||| ||||||||||| ||||||
Sbjct  217   TTTCTTAAGTTCTG-TGAAAAATGGGATGCTTTGCGTCAACGCCGAAAGACTCAGGTGGG  275

Query  60    AATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGATA  119
             || ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  276   AACAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTATATGTACCTGGTTTAAGGATA  335

Query  120   CCGAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTGGAA  179
             || ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct  336   CCCAGAGCGGTGGATTTTTTGCAGTCACTTGGTGATCAATTACCGAAGACTTTAGTGGAA  395

Query  180   CGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACAATT  239
             ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct  396   CGCTTGACAGCTTTAAGAACGCGTATAGTAGTGATGGCTAATCAAGAAGGACCTACAATT  455

Query  240   ACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT  299
             |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  456   ACGAGAACTAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAAGCT  515

Query  300   TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT  359
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  516   TTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAGTTT  575

Query  360   AAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCAAAC  419
             ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct  576   AAAGTGCAATTTAATTGGGTAAATCAGGAGGATGAGGAAGAGGAAACAGAGATGTCAAAC  635

Query  420   GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC  479
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  636   GTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAAGCC  695

Query  480   AATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCCGAA  539
             |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct  696   AATTTACTGCTTCTTCCTAGAGGTTCTAGTGATGGTCACAATCATCCGAAAGTATCCGAA  755

Query  540   GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGTGCC  599
             ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  756   GAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGATTGTGCC  815

Query  600   GTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGACTTA  659
             ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  816   GTTAAGCATGTTCTCCCCCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCAGTTGACTTA  875

Query  660   GCGGAAGGGGTTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA  719
             || |||||   |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  876   GCAGAAGGAACTCTACGGGCTCTTTGCTTGCAAGCACTTGGCCAGGGTGTTGATATCCAA  935

Query  720   CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT  779
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  936   CTTGGCATGGCGATTGATAGCTCAAAGGCCACTCTTGCAGTAAAACGAAGACTTTCATGT  995

Query  780   GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTAGCAAAT  839
             ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  996   GAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTCCCGTTAGCAAAT  1055

Query  840   GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG  899
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1056  GGTTGGGGAGAAAAGCATGGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAAGGCTGCG  1115

Query  900   GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG  959
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1116  GCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACATGGCATG  1175

Query  960   GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGCATCTGAA  1019
             ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct  1176  GCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTCAAAGAAAGTAAGAAAGCATCCGAA  1235

Query  1020  GCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTTGGAACAATGAAGTAT  1079
             ||||| ||||||||| | ||||||||||| |||||||| || |||||||||||||| |||
Sbjct  1236  GCATTCAACGCCTCTGCGCCTACTTCAAGAACACCGCCCCTCTTTGGAACAATGAAATAT  1295

Query  1080  CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTATAC  1139
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  1296  CTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTGATCTCTAC  1355

Query  1140  TCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA  1199
             || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1356  TCCTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGGCATTGAAA  1415

Query  1200  CCAGATGAGTATCAACTTCCTCTCGTCGAAGCTTAGTAGTCTGAAGATGCTCAAAGCGCT  1259
             |||||||||||||||||||| |||| |||||||| |||||||||||||||||||||||||
Sbjct  1416  CCAGATGAGTATCAACTTCCACTCGCCGAAGCTTCGTAGTCTGAAGATGCTCAAAGCGCT  1475


> AT1G73390.1 | Symbols:  | Endosomal targeting BRO1-like domain-containing 
protein | chr1:27590810-27594198 REVERSE LENGTH=1579
Length=1579

 Score = 1380 bits (747),  Expect = 0.0
 Identities = 1091/1256 (87%), Gaps = 27/1256 (2%)
 Strand=Plus/Plus

Query  1     TTTC-TTAAGCTCTGTTGAAAATGGGATGCTTTGCATCAACACCGAAAGACT-CTGGTGG  58
             |||| ||||||| | | | |||||||||||||||||||||  ||||| || | |||||||
Sbjct  33    TTTCGTTAAGCT-T-TAG-AAATGGGATGCTTTGCATCAAGGCCGAATGA-TACTGGTGG  88

Query  59    GAATAGAAGAAAGCCAACAAGCATCGGTGAGGTTTCAGTGTATGTACCTGGTTTACGGAT  118
              || |||||||||||||| |||||||| || |||||||| ||||||||||||||| ||||
Sbjct  89    AAACAGAAGAAAGCCAACGAGCATCGGAGATGTTTCAGTATATGTACCTGGTTTAAGGAT  148

Query  119   ACCGAGAG-CGGTGGA-TTTTTTGCAGTCACTTGGTGATCAATTACCCAAGACTCTAGTG  176
             ||| | || | ||||| |||| | |||||||| ||||||||||| || ||||||||||||
Sbjct  149   ACCTA-AGCCCGTGGAGTTTTCT-CAGTCACTGGGTGATCAATTGCCAAAGACTCTAGTG  206

Query  177   GAACGCTTGACAGCTTTAAGAACGCGTATAGTGGTGATGGCTAACCAAGAAGGACCTACA  236
             || ||||||||||||||||||||| | ||||| |||||||| || ||||||||||| || 
Sbjct  207   GAGCGCTTGACAGCTTTAAGAACGAGAATAGTTGTGATGGCAAATCAAGAAGGACCAACT  266

Query  237   ATTACGAGAACGAGGAGAAAGACACAACATGGAGGTTCAACGCTCTTGGATCTCCATCAA  296
             || || ||||| ||||| |||||||| ||||||||||| ||||||   ||||||||||| 
Sbjct  267   ATAACAAGAACCAGGAGGAAGACACAGCATGGAGGTTCTACGCTCGCAGATCTCCATCAC  326

Query  297   GCTTTGCTAGATTATCTACCTGTTGTCTTGGGATTAACTAAAGATGGTAGCCATCTACAG  356
             ||||||  ||||||| |||| ||| |||| |||||||||||||||||||||||| |||| 
Sbjct  327   GCTTTGGAAGATTATATACCGGTTCTCTTAGGATTAACTAAAGATGGTAGCCATTTACAA  386

Query  357   TTTAAAGTACAATTTAATTGGGTAAATCAGGAGGACGAGGAAGAGGAAACAGAGATGTCA  416
             || |||||||| |||||||||||||||||||| || || |||||||||||||  ||||||
Sbjct  387   TTCAAAGTACAGTTTAATTGGGTAAATCAGGAAGATGAAGAAGAGGAAACAGCCATGTCA  446

Query  417   AACGTTTGGTATGAAGTTTTATCTGTTTTGCATCTAATGGCAATGCTACAAATGTCTCAA  476
             || |||||||||||| | || || ||||||||||||||||||||| |||||||||| |||
Sbjct  447   AATGTTTGGTATGAAATATTGTCGGTTTTGCATCTAATGGCAATGTTACAAATGTCACAA  506

Query  477   GCCAATTTACTGCTTCTTCCTAGAGGTTCTAGTGACGGTCACAACCATCCGAAAGTATCC  536
             ||||||||||||||||||||||||||||| ||||| ||   | | ||||| ||| |||| 
Sbjct  507   GCCAATTTACTGCTTCTTCCTAGAGGTTCCAGTGATGG---CTATCATCCAAAAATATCA  563

Query  537   GAAGAAAACAGACGAACTTCGATTGATATCTTCTTAAAAGCAGCTGGATATCTTGACTGT  596
             |||||||| || ||| |||| || |||||||||||||||||||||||||| || ||||||
Sbjct  564   GAAGAAAATAGGCGAGCTTCAATCGATATCTTCTTAAAAGCAGCTGGATACCTGGACTGT  623

Query  597   GCCGTTAAGCATGTTCTCCCTCAGTTTTCTGCTGAGCAAAGGAGAAGTTTACCGGTTGAC  656
             || || ||||||||||| ||||| |||||  | ||||| ||||||||||||||  |||||
Sbjct  624   GCTGTGAAGCATGTTCTTCCTCATTTTTCAACCGAGCAGAGGAGAAGTTTACCAATTGAC  683

Query  657   TTAGCGGAAGG-GGTTCTACGGGCTCTTTGCTTGCAAGCACTT-GGCCAGGGTGTTGATA  714
              |||| ||||| | || |||| || ||||||||||||||| || ||||||||||||||||
Sbjct  684   CTAGCAGAAGGAGCTT-TACGTGCACTTTGCTTGCAAGCA-TTAGGCCAGGGTGTTGATA  741

Query  715   TCCAACTTGGCATGGCGATTGATAGCT-CAAAGGCCACTCTTGCAGTAAAACGAAGACTT  773
             |||||||||| |||||||||||||| | |||| ||||||||||| || || |||||||||
Sbjct  742   TCCAACTTGGGATGGCGATTGATAG-TGCAAAAGCCACTCTTGCCGTGAAGCGAAGACTT  800

Query  774   TCATGTGAAATGGTGAAATATTGGCAGCAGGCACAAGATAATTTAATGAATCTTCCGTTA  833
             |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |||
Sbjct  801   TCATGTGAAATGGTGAAATACTGGCAGCAGGCACAAGATAACTTAATGAATCTTCCATTA  860

Query  834   GCAAATGGTTGGGGAGAAAAGCAT-GGACTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA  892
             ||||| || ||||| |||||||||  | ||||||||||||||||||||||||||||||||
Sbjct  861   GCAAACGGGTGGGGCGAAAAGCATATG-CTCTTTGTTAAGTGGAAGTATGTTGAAGCTAA  919

Query  893   GGCTGCGGCTTACTACTATCATGGTTTGATTCTTGATGAAGGAAACACAGAGAAGTCACA  952
             |||||| ||||||||||| || ||| ||||||||||||||||||| |||||||| |||||
Sbjct  920   GGCTGCAGCTTACTACTACCACGGTCTGATTCTTGATGAAGGAAATACAGAGAAATCACA  979

Query  953   TGGCATGGCAGTTGCTGCTTTACAAGCTGCAGATGAATGTTTTAAAGAGAGTAAGAAAGC  1012
             ||||||||| |||||||||||||| ||||||||||| ||||| ||||| |||||||||||
Sbjct  980   TGGCATGGCGGTTGCTGCTTTACAGGCTGCAGATGAGTGTTTGAAAGAAAGTAAGAAAGC  1039

Query  1013  ATCTGAAGCATTTAACGCCTCTTCACCTACTTCAAGGACACCGCCGCTATTT-GGAACAA  1071
             |  ||| || |||||| |||||||||| || |||||||| ||  | || ||| || ||||
Sbjct  1040  AAGTGAGGCGTTTAACACCTCTTCACCCACGTCAAGGACTCCTTCACT-TTTCGGGACAA  1098

Query  1072  TGAAGTATCTAACTGAGAAAATCCCGAAAGATACTTCGAGTAAAGTCAGGATAAACCGTG  1131
             |||| |||||| | |||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct  1099  TGAAATATCTATCAGAGAAAATACCAAAAGAAACTTCAAGTAAAGTCAGGATAAACCGTG  1158

Query  1132  ATCTATACTCTTATGAAAAAATCATGGAGACAGCACCAACACTTCCTGATTTCGCTTTGG  1191
             ||||||||||||||||||| |||||||||||||||||||| ||||||||||| || ||||
Sbjct  1159  ATCTATACTCTTATGAAAAGATCATGGAGACAGCACCAACGCTTCCTGATTTTGCCTTGG  1218

Query  1192  CATTGAAACCAGATGAGTATCAACTTCCT-CTCGTCGAAGCTT-AGTAGTCTGAAG  1245
             |||||||||| |||||||| ||||||||| || || || || | | | ||||||||
Sbjct  1219  CATTGAAACCCGATGAGTACCAACTTCCTTCT-GTTGATGCGTCA-TGGTCTGAAG  1272



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 61897271985


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5