BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg920732 Length=721 Score E Sequences producing significant alignments: (Bits) Value AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biologi... 1136 0.0 > AT1G18060.1 | Symbols: | unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 74 Blast hits to 74 proteins in 29 species: Archae - 0; Bacteria - 19; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | chr1:6211873-6213444 REVERSE LENGTH=1003 Length=1003 Score = 1136 bits (615), Expect = 0.0 Identities = 683/716 (95%), Gaps = 3/716 (0%) Strand=Plus/Plus Query 6 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGGGTTTCGTCCCCATCTTCTTC- 64 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 116 AGCTTCTCAGAGACGATGATGGTCTCACTAGCTTCATGTGTTTCGTCCCCATCTTCTTCG 175 Query 65 TCTC--TTCCTTAGTCGTCGCGAGAGATTACATTTGGTGAAAGCCACGGTCGATGGTAGG 122 |||| ||| |||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 176 TCTCTGTTCTTTAGTCGTCGGGAGAGATTACATTTGGTGAAAGCCACGGTGGATGGCAGG 235 Query 123 AACCAGATTGTCCCACCGGCAAAAGAGCAAATCCCTAACAAAGAAGTAACGGAGAGTGTG 182 |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 236 AACCAGATTGTCCCACCGGCAAAAGATCAAATCCCTAACAAACAAGTAACGGAGAGTGTG 295 Query 183 AATGTGTTAAAAACCGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 242 ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 296 AATGTATTAAAAACGGCTGCAAAAACTCGGAAAGTTGCAGCAGATGAGATTTTAGCTGCT 355 Query 243 TTTTCTGCTATTGAAAAGGCTAAGATTGATCCATCCACATTCCTTGAAACCCTTGGTGGT 302 || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| Sbjct 356 TTCTCTGCTATCGAAAAGGCTAAGATTGATCCATCCACTTTCCTTGAAACGCTTGGTGGT 415 Query 303 ACCGAGTCTCCTGGACGAACATGGATGCTCATCTTCACCGCCGAGAAGAAACTGAAGAAA 362 |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| Sbjct 416 CCCGAGTCTCCTGGACGAACATGGATGCTTATCTTCACCGCCGAGAAGAAACTGACGAAA 475 Query 363 GGTCGTTATTTCCCTCTAACCGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 422 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 476 GGTCGTTATTTCCCTCTAACTGCTGTTCAGAGATTTGATGCTGCGGGAAAAAGAATAGAG 535 Query 423 AATGGGGTGTATCTTGGTCCATTAGGAGCATTAACATTCGAAGGAAGGTTTTCTTGGAAG 482 ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 536 AATGGGGTGTATCTTGGTCCATTTGGAGCATTAACATTCGAAGGAAGGTTTTCATGGAAG 595 Query 483 AACCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 542 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 596 AATCGGATACTAGCTTTTGTCTTCGAACAGATCCGCATAAAGATTGGACCATTAGATCCT 655 Query 543 CTAGAGATCAGTTTGGGGAAGAAAGACGCCGAGGAAGAGCCGAGTAATAAAGACCCTTTC 602 |||||| |||| ||||||||||||||||| | ||||||||| |||||||||||||||||| Sbjct 656 CTAGAGTTCAGCTTGGGGAAGAAAGACGCTGTGGAAGAGCCTAGTAATAAAGACCCTTTC 715 Query 603 TTCATTTGGTTTTACATCGATGAAGAAATAGCCGTTGCTCGAGGAAGAAGTGGCGGTACA 662 ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 716 TTCATTTGGTTCTACATCGATGAAGAAATAGCCGTTGCTCGAGGTAGAAGTGGCGGTACA 775 Query 663 GCTTTCTGGTGTCGTTGTCGCCGCATTGCTTCCTCATGACTCTCTTCTTCTTCTCA 718 |||||||||||||||||||| ||||||||||||| ||||||||||||| ||||||| Sbjct 776 GCTTTCTGGTGTCGTTGTCGTCGCATTGCTTCCTAATGACTCTCTTCTACTTCTCA 831 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 34962966312 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5