BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920822
Length=1156
Score E
Sequences producing significant alignments: (Bits) Value
AT1G18810.1 | Symbols: | phytochrome kinase substrate-related ... 1452 0.0
> AT1G18810.1 | Symbols: | phytochrome kinase substrate-related
| chr1:6485596-6487030 REVERSE LENGTH=1435
Length=1435
Score = 1452 bits (786), Expect = 0.0
Identities = 861/897 (96%), Gaps = 6/897 (1%)
Strand=Plus/Plus
Query 266 TCCTCATCCCCAATTGACGAAAACGACGTCGTCTAGATCAAGAACAAGCCGACACGGAAC 325
|||||||||||| |||||||||||||||||||| ||||||| |||||||||||| |||||
Sbjct 446 TCCTCATCCCCAGTTGACGAAAACGACGTCGTCAAGATCAAAAACAAGCCGACATGGAAC 505
Query 326 GCCAAGTGTAAGATCCGAGTCAAGTTACAACAGTCAAACCTTTCTCATGAGGATTAAC-A 384
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 506 GCCAAGTGTAAGATCCGAGTCAAGTTGCAACAGTCAAACCTTTCTCATGAGGATTAACAA 565
Query 385 --ACAATGAGAATAAGCAACGGAAAACGAACGAGACAAGCCTCTCTTTTGGTCGGTTTAG 442
||||||| |||||||||||||||| |||||| || ||| ||||||||||| |||||||
Sbjct 566 CCACAATGAAAATAAGCAACGGAAAATGAACGATACGAGCATCTCTTTTGGTGGGTTTAG 625
Query 443 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAATCTCCTGTAA 502
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 626 ATGTTACGGTCCCTGCTCTGGGGTCAAAACCGTCCATACCGACCCAAAAAACTCCTGTAA 685
Query 503 AAGTAGAAATTCCGATCGGGATTTCGTTGCTTACGACGCAAGAAAGCACAACGACAAGCC 562
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 686 AAGTAGAAATTCCGATCGGGATTTTGTTGCTTACGACGCAAGAAAGCACAACGACAAACC 745
Query 563 AAGACTCCATTTTGAAGCCAAGAAAGTGGATTATAATGAGCCAGAGAAGATCCCATTACC 622
|||||||||||||||||||||||||| ||||| | ||| || ||||||||| |||||||
Sbjct 746 AAGACTCCATTTTGAAGCCAAGAAAGCGGATTTTCATGCGCAAGAGAAGATTTCATTACC 805
Query 623 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 806 TATTCAAAGGTCCGATATCGCCATGAACCTCGAGAGAAAGCTCTCTCTGCTTACATGGGA 865
Query 683 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAAT---GGTAATAACTC 739
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 866 CGCAATACCAAACCAACTCTCTACCAAGAACAACAATCACAACAATAATGGTAATAACTC 925
Query 740 TTCAATGAGCAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCGAGTTCTGATTTGTT 799
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 926 TTCAATGAGTAGCAACACGCAAGAGGAAGAGACAGCAAGTGTAGCAAGTTCTGATTTGTT 985
Query 800 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCAAGTGAGGCCAGCATTGGATGGAG 859
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 986 CGAGATTGAGAACATAACGAGCAGTGTCTATGAGCCGAGTGAGGCCAGCATTGGATGGAG 1045
Query 860 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGACGAAGAG 919
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1046 TGTGGTAACGGGAAGTATGGCAGATCAATCGGTGATTTCGGATTTCGATATGATGAAGAG 1105
Query 920 GGTCACGAGAAGTGGTCCGGCGGTTAGAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 979
||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1106 GGTCACGAGAAATGGTCCGGTGGTTAAAACCAAACCGGTGATTGGTGAGAAAGTCCGGTC 1165
Query 980 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1039
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1166 GGCTGGGTTTTTGTCGGGTTGTAAGAGTCACAAAGCTGTCTCGGTTGTTGATAGTTCTAG 1225
Query 1040 AAAAGCGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1099
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 AAAAGTGAAAGAAACAGCCAAGGTTGATCATCACGAGATGTCTCATCAGAAGAAGTTTAA 1285
Query 1100 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTGTGT 1156
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1286 AACTGAGATTAGGATTCAAGACTTGAGCTTTCTTTAATAAACAATGTTTGTGTATGT 1342
Score = 401 bits (217), Expect = 6e-111
Identities = 254/271 (94%), Gaps = 5/271 (2%)
Strand=Plus/Plus
Query 1 TATATACACATACAATAGAGATGGATGCTGAAAAGAAGAGTGCTCATTTTCGCCAAATCT 60
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 140 TATATACACATACAA-AGAGATGGATGCTGAAAAGAAGAGTGCCCATTTTCGCCAAATCT 198
Query 61 CAACTTATAAACCACAACTACTTGTCCTCTCCTCGATCCAAGAACAA-CCTTCTTCAAAA 119
|| |||||||||||||| |||||||||||||||| ||||||||| || ||||||||||||
Sbjct 199 CATCTTATAAACCACAATTACTTGTCCTCTCCTCAATCCAAGAA-AACCCTTCTTCAAAA 257
Query 120 ATCTCAGACAAACCCAATATCAAAGCTGATAATGACGCCGAGATTGGAGTTTTCGGAGCA 179
|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 258 ATCTCAGAAAAAGCCAATATCAAAGCTGACAATGACGCCGAGATTGGAGTTTTCGGAGCA 317
Query 180 GAAAAATACTTCAGCATGAAGCTAGATCCTGTTGATTCCTCGGCGGATATCACCAAGCAA 239
||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 318 GAAAAGTACTTCAGCATGAAGCTAGATCATGTTGATTCCACGGCGGATATCACCAAGCAA 377
Query 240 CACGAAAAGGAAAACACAC-TGGATCGTCCT 269
|| |||||||||||||||| || ||| ||||
Sbjct 378 CATGAAAAGGAAAACACACATG-ATCATCCT 407
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56726615850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5