BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920848
Length=678
Score E
Sequences producing significant alignments: (Bits) Value
AT1G19050.1 | Symbols: ARR7 | response regulator 7 | chr1:65778... 963 0.0
> AT1G19050.1 | Symbols: ARR7 | response regulator 7 | chr1:6577833-6579178
REVERSE LENGTH=807
Length=807
Score = 963 bits (521), Expect = 0.0
Identities = 627/677 (93%), Gaps = 11/677 (2%)
Strand=Plus/Plus
Query 1 TCTTCTCTC-TTTTTCTTCTGA-CTTGACAATGGCGGTCGGTGAGGTTATGAGGATGGAG 58
||| ||||| ||||| |||||| |||||||||||||| |||||||| ||||||||||||
Sbjct 71 TCTGCTCTCTTTTTTATTCTGAGTTTGACAATGGCGGTTGGTGAGGTCATGAGGATGGAG 130
Query 59 ATTCCTGCCGGTGGAGAGTTGACAGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAC 118
||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 131 ATTCCCGCCGGTGGAGATTTGACTGTTACTACTCCGGAGTTGCATGTTCTTGCCGTCGAT 190
Query 119 GATAGTATCGTGGATCGTAAAGTTATCGAGAGGTTGCTTCGAATCTCTTCTTGTAAAGTG 178
|||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||
Sbjct 191 GATAGTATTGTGGATCGTAAAGTCATCGAGAGGTTGCTTAGAATCTCTTCTTGTAAAGTG 250
Query 179 ACGACTGTAGAGAGTGGGACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGA 238
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 251 ACGACTGTAGAGAGTGGAACTAGGGCTTTGCAGTATCTTGGCTTAGATGGAGGCAAAGGG 310
Query 239 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 GCTTCTAATCTTAAGGATTTGAAGGTGAATTTGATAGTGACGGATTACTCAATGCCAGGA 370
Query 299 CTAACAGGATATGATCTCCTCAAGAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 358
|| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 371 CTTTCAGGATATGATCTCCTTAAAAAGATTAAGGAATCTTCAGCATTCAGAGAAGTACCA 430
Query 359 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATAGAAGAATGTCTCAAGGAAGGA 418
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 431 GTAGTGATTATGTCATCTGAGAACATCTTACCTCGTATACAAGAATGTCTCAAAGAAGGA 490
Query 419 GCAGAGGAATTCCTGTTGAAACCAGTGAAGCTAGCAGATGTTAAGCGAATAAAACAACTT 478
|||||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 491 GCAGAGGAATTCTTGTTGAAACCGGTGAAGCTAGCAGATGTAAAGCGAATCAAACAACTT 550
Query 479 ATATTGAGAAATGAAGCTGAGGAATGCAAAACCTTAAGCCATTCTAACAAGAGAAAGCTT 538
||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 551 ATAATGAGGAATGAAGCTGAGGAATGCAAAATCTTAAGCCATTCTAACAAGAGAAAGCTT 610
Query 539 CAAGAAGACTGTGATAcatcatcatcatcatcatcaAGTCATGATGATTCTTCTGTCAAG 598
||||||||| ||||||||||||||||| | ||||||||||| ||||| |||||
Sbjct 611 CAAGAAGACAGTGATACATCATCATCA--A-------GTCATGATGATACTTCTATCAAG 661
Query 599 GACACTCCATCTTCTAAACGGATGAAATCAGAATCTGAAAACCTTTCTTCTCTATTTTGA 658
||| || ||| ||| ||||| ||||||||||||||||||||||||| ||||||| |||||
Sbjct 662 GACTCTTCATGTTCAAAACGAATGAAATCAGAATCTGAAAACCTTTTTTCTCTACTTTGA 721
Query 659 AATATATATATAGAGGC 675
| ||||| |||||||||
Sbjct 722 ATTATATGTATAGAGGC 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32802897991
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5