BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920960
Length=952
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20030.2 | Symbols: | Pathogenesis-related thaumatin superf... 1308 0.0
> AT1G20030.2 | Symbols: | Pathogenesis-related thaumatin superfamily
protein | chr1:6945425-6947344 FORWARD LENGTH=1578
Length=1578
Score = 1308 bits (708), Expect = 0.0
Identities = 871/947 (92%), Gaps = 22/947 (2%)
Strand=Plus/Plus
Query 10 TCTCAGGAGTTATGTCAAGGAGCTTCACATTTTCGAACAAATGCGAATACACAGTGTGGC 69
|||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 341 TCTCCGGAGTTATGTCAAGGAGCTTCACATTTTCAAACAAATGCGATTACACAGTGTGGC 400
Query 70 CGGGAATTCTATCTAACGCCGGAGTTCCTCCATTATCAACTACAGGCTTCGTCCTTCAGA 129
|||||||||||||||||||||||||| |||||||| |||| || ||||||||||| | ||
Sbjct 401 CGGGAATTCTATCTAACGCCGGAGTTTCTCCATTACCAACCACCGGCTTCGTCCTCCTGA 460
Query 130 AAGGCGAGACGCGTACAATCGACGCGCCGTCTTCATGGGGTGGTCGTTTCTGGGGAAGGA 189
|||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||| |
Sbjct 461 AAGGCGAGACGCGTACAATCAACGCACCGTCATCATGGGGGGGTCGTTTCTGGGGAAGAA 520
Query 190 CACTCTGCTCTACCAATTCCGATGGAAAATTCTCCTGCGCAACTGGAGATTGCGGTTCCG 249
|||||||||| ||| ||||||||||||||||||| || || || ||||||||||| ||||
Sbjct 521 CACTCTGCTCAACCGATTCCGATGGAAAATTCTCGTGTGCCACCGGAGATTGCGGCTCCG 580
Query 250 GAAAACTTGAATGCTCCGGCGCTGGAGCTGCCCCTCCTGCGACTCTAGCTGAATTTACCC 309
||||| | ||||||||||||||||||||||| |||||||||||| |||||||||| || |
Sbjct 581 GAAAAATCGAATGCTCCGGCGCTGGAGCTGCTCCTCCTGCGACTTTAGCTGAATTCACTC 640
Query 310 TCGATGGCTCCGGAGGACTCGATTTCTACGATGTCAGCCTCGTCGACGGCTACAATGTTC 369
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 641 TCGATGGCTCCGGAGGACTCGATTTCTACGATGTCAGTCTCGTCGACGGCTACAATGTCC 700
Query 370 AGATGCTGGTGGTTCCTCAAGGTGGCTCCGGTCAGAATTGTAGCAGCACCGGCTGCGTCG 429
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 701 AGATGCTGGTGGTTCCTCAAGGCGGCTCCGGTCAGAATTGCAGCAGCACCGGCTGCGTCG 760
Query 430 TCGATTTAAACGGCTCATGTCCGTCCGAGCTAAGGGTAAATAGCGTCGGAGGTGACGGCG 489
||||||||||||| || || ||||| ||||||||||| ||||||||| ||
Sbjct 761 TCGATTTAAACGGATCTTGCCCGTCGGAGCTAAGGGTGAATAGCGTC------GA----- 809
Query 490 GCGGTGGGAAAGG-GGCGGTGGCGATGGCGTGTAAAAGCGCGTGCGAAGCATTTCGGCAG 548
| ||| |||| |||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 810 -C---GGG-AAGGAGGCGGTGGCGATGGCGTGTAAAAGTGCGTGCGAGGCGTTTCGGCAG 864
Query 549 CCGGAGTATTGCTGCAGCGGGGCGTTTGGGTCGCCTGACACGTGTAAGCCGTCTTCGTAC 608
|||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||
Sbjct 865 CCGGAGTATTGCTGCAGCGGCGCGTTTGGATCGCCTGACACGTGTAAGCCGTCTACGTAC 924
Query 609 TCGAGGATCTTCAAGAGCGCGTGTCCACGCGCCTATAGCTACGCGTATGACGATAAGTCT 668
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 925 TCGCGGATCTTCAAGAGCGCGTGTCCACGCGCCTATAGCTACGCGTATGACGATAAGTCT 984
Query 669 AGTACATTTACGTGCGCGAAATCTCCCAACTACGTTATCACTTTCTGTCCTTCTCCCAAC 728
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 985 AGTACATTTACGTGCGCGAAATCTCCCAACTACGTCATCACTTTCTGTCCTTCTCCCAAC 1044
Query 729 ACCAGCCTAAAATCAGCCGAGGAACAGAGCACAGAGACAATGACGACGACAAGTCCAAGC 788
||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1045 ACCAGCCTAAAATCAGCTGAGGAACACAGCACAGAGACAATGACGACGACAAGTCCAAGT 1104
Query 789 TCCGGCAGTACGACGTCGTCGCAGATGGTCTACGAAGGTGCTCTAGACGAAAGGAGTGGT 848
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1105 TCCGGCAGTACGACGTCGTCGCAGATGGTCTACGAAGGTGCTCTGGACGAAAGCAGTGGT 1164
Query 849 TCACCATCTACATGTCACGGCGTATCACGAGCAATCACTGTCGTTCT-CTC--GCTTGCT 905
||||||||||| | |||||||||||||||||||||||| |||||||| ||| |||||||
Sbjct 1165 TCACCATCTACGTATCACGGCGTATCACGAGCAATCACAGTCGTTCTTCTCTCGCTTGCT 1224
Query 906 TTTTGTCGTATGTGGTGGTTCTTTTGACCAGA--TTATATGTCTTAG 950
||||||||||||||||||||||| |||||||| |||| ||||||||
Sbjct 1225 TTTTGTCGTATGTGGTGGTTCTTCTGACCAGAGATTATTTGTCTTAG 1271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46567054269
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5