BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg920964
Length=622
Score E
Sequences producing significant alignments: (Bits) Value
AT1G20070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 747 0.0
> AT1G20070.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures;
EXPRESSED DURING: 11 growth stages; Has 26 Blast hits to
26 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 2; Plants - 24; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:6958010-6959123 REVERSE LENGTH=1114
Length=1114
Score = 747 bits (404), Expect = 0.0
Identities = 542/607 (89%), Gaps = 16/607 (3%)
Strand=Plus/Plus
Query 13 TTAT-ATCAATGGAAACAATAGCAGTTCAACGTCCACCGGGTAAACAGGTTTCGGGTTTG 71
|||| ||||||||||||||||||||||||| | ||||||||||||| ||||||||||||
Sbjct 290 TTATAATCAATGGAAACAATAGCAGTTCAAAATGCACCGGGTAAACAAGTTTCGGGTTTG 349
Query 72 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 131
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 350 AGACCATTCAAGAACCCTAAAAGAAGGAGTTCTCGTGGTTCTCTTTCAAGATCCGGAGGA 409
Query 132 AGTTTGGCTCTTCCGAATAATCCAAAGTCGTCTTGGGGGTCGTCTCCGGCATATCCGCCG 191
|||||||||||||| |||||||| |||||||||||| || ||||||||||||||||||
Sbjct 410 AGTTTGGCTCTTCCTCTTAATCCAACGTCGTCTTGGGGATCTTCTCCGGCATATCCGCCG 469
Query 192 CCGCCA-AGATACTCTCAGCCTCCTCTTCTCCCTCTGCCACGCGTCAACAGCTCAACTCT 250
|||| | || |||||||||||||||||||||||||| ||||| ||||||||||||||| |
Sbjct 470 CCGC-ATAGTTACTCTCAGCCTCCTCTTCTCCCTCTACCACGTGTCAACAGCTCAACTGT 528
Query 251 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGAGTCAACAACAACTCTTCTCTCAATTG 310
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 529 TCCTCTGCAACGCGTCAACAGCTCTCGACCACGTGTCAACAACAACTCTTCTCTCAATCG 588
Query 311 CGTCGCTCAGACGAAAATAAATT-CTGAAACACACA--A-GAAATCAGACTTCGTTGAAT 366
||| |||||||| |||| ||| |||||||||||| | |||| |||| ||| | ||||
Sbjct 589 CGTTGCTCAGAC-AAAAGCTATTTCTGAAACACACATGAAGAAAGCAGAGTTCATCGAAT 647
Query 367 CGGTTCCGATACTGACTCGAACTGGTTCAGTTCCGGCCC-GGTCTAACAACGT-GCATGA 424
| | | || |||||||||||| |||||||| ||| || || | ||| | || || |||
Sbjct 648 CTG--C-GAGACTGACTCGAACCGGTTCAGTGCCGATCCAGG-CGAACCA-GTTGCGTGA 702
Query 425 TTTTCCTAAAGGATTTGATGGTTACCCAGGTCCAGCGATCATGTTATTATCTCCACCGCC 484
||||||| ||||||| ||||| ||||| |||||||||||||||||||||||||| || ||
Sbjct 703 TTTTCCTGAAGGATTCGATGGCTACCCCGGTCCAGCGATCATGTTATTATCTCCGCCACC 762
Query 485 GAGTAGTTTGCCCATGCCTAGGTTTTCTATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 544
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 763 GAGTAGTTTGCCCATGCCTAGGTTTTCGATCAAACCGAAGCTTCGTTGCAACGTAGAAGC 822
Query 545 TAATGGCAAAAATGACGTTCCCGCCGATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 604
| ||| |||| |||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 823 TGCTGGGAAAAGTGACGTAGCTACCAATAACATCCGGCGAGTTTTACAGCTCCGGTGAAA 882
Query 605 AGGTGGT 611
||||||
Sbjct 883 -GGTGGT 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29989785759
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5