BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921008 Length=851 Score E Sequences producing significant alignments: (Bits) Value AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47... 1290 0.0 > AT1G20440.1 | Symbols: COR47, RD17, AtCOR47 | cold-regulated 47 | chr1:7084409-7085772 REVERSE LENGTH=1219 Length=1219 Score = 1290 bits (698), Expect = 0.0 Identities = 803/854 (94%), Gaps = 5/854 (1%) Strand=Plus/Plus Query 2 AATCGAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 61 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 90 AATCAAATCAAGATTAACTATGGCTGAGGAGTACAAGAACAACGTTCCCGAGCACGAGAC 149 Query 62 ACCAAAGGTCGCAACAGAGGAATCACCAGCGACGACTACAGAGGTTACGGATCGTGGATT 121 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 150 ACCAACGGTCGCAACAGAGGAATCACCAGCGACGACAACAGAGGTTACGGATCGTGGATT 209 Query 122 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACGACGACGCTCGA 181 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 210 GTTTGATTTCTTGGGGAAGAAGGAAGAGGAAGTGAAACCTCAAGAGACAACGACGCTCGA 269 Query 182 GCCTGAGTTCGATCACAAGGCTCAGAACTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 241 | ||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| Sbjct 270 GTCTGAGTTCGATCATAAGGCTCAGATCTCTGAACCGGAGTTAGCTGCGGAGCACGAGGA 329 Query 242 AGTGAAGGAGAACAAGATTACTCTCCTTGAAGAGCTTCAAGAGAAGACTGAGGAAGATGA 301 |||||||||||||||||||||||| || || ||||||||||| ||||| ||||||||||| Sbjct 330 AGTGAAGGAGAACAAGATTACTCTGCTAGAGGAGCTTCAAGAAAAGACCGAGGAAGATGA 389 Query 302 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACGGCTCTGCTTCCTCTTC 361 ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 390 GGAGAACAAGCCTAGTGTCATCGAAAAGCTTCACCGATCCAACAGCTCTTCTTCCTCTTC 449 Query 362 GAGCGATgaagaaggtgaggagaagaaggagaagaagaaga---tcgttgaaggagagga 418 ||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 450 GAGCGATGAAGAAGGTGAGGAAAAGAAGGAGAAGAAGAAGAAGATCGTTGAAGGAGAGGA 509 Query 419 agagaagaaaggactagcggagaagatcaaggagaagCTTCCAGGCCACCACGACAAGAA 478 ||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||| Sbjct 510 AGATAAGAAAGGACTAGTGGAGAAGATCAAGGAGAAGCTCCCAGGACACCACGACAAGAC 569 Query 479 ACCAGAGGATGATGTACCAGTTTCCACCACCATCCAGGTACCAGTGTCGGAGAGTGTGGT 538 | ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||| Sbjct 570 AGCAGAGGATGATGTACCAGTTTCCACTACCATCCCGGTACCAGTGTCGGAGAGTGTGGT 629 Query 539 GGAGCATGACCAACCCGAGGAAGAGAAGAAAGGACCAGT-GCAGAAGATCAAGGAGAAGC 597 |||||||||||| ||||||||||||||||||||| ||| | |||||||||||||||||| Sbjct 630 GGAGCATGACCATCCCGAGGAAGAGAAGAAAGGATTAGTTG-AGAAGATCAAGGAGAAGC 688 Query 598 TTCCTGGCCACCACGACAAGACTGCAGAGGATTCACCAGCTGTCACCAGCACGCCGTTGG 657 ||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||||| Sbjct 689 TTCCTGGTCACCACGACGAGAAAGCAGAGGATTCACCAGCTGTCACGTCCACGCCGTTGG 748 Query 658 TTGTAACGGAGCATCCAGTGGAGCCTACGACGGAGCATCCGGAGGAGCATCCGGAGGAGA 717 |||||||||||||||| ||||||||||||||||||| ||| | ||| ||||||||||||| Sbjct 749 TTGTAACGGAGCATCCGGTGGAGCCTACGACGGAGCTTCCAGTGGAACATCCGGAGGAGA 808 Query 718 AGAAGGGCATTTTGGGAAAGATTAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 777 ||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||| Sbjct 809 AGAAGGGGATTTTGGAAAAGATCAAAGAGAAGCTTCCAGGTTATCATGCCAAGACCACTG 868 Query 778 AAGAGGAAGAGAAGAAAGTAAAAGAGACTGATGCTTAAGAAAAATGGTTAAAGAATGAAT 837 ||||||||| |||||||| ||||||| |||||| ||||| |||||||||||||||||||| Sbjct 869 AAGAGGAAGTGAAGAAAGAAAAAGAGTCTGATGATTAAGCAAAATGGTTAAAGAATGAAT 928 Query 838 AATGATGTGGGAGT 851 |||||||||||||| Sbjct 929 AATGATGTGGGAGT 942 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 41493405422 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5