BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921126
Length=241
Score E
Sequences producing significant alignments: (Bits) Value
AT1G21520.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 340 3e-93
> AT1G21520.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr1:7534154-7534789 REVERSE LENGTH=636
Length=636
Score = 340 bits (184), Expect = 3e-93
Identities = 219/236 (93%), Gaps = 2/236 (1%)
Strand=Plus/Plus
Query 7 ATACTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG 66
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 43 ATAGTCTGAAGAAGATGAGCTCCGGAGAACTGAAGCCGTTCAAGAAGAAAGAAGGGAGTG 102
Query 67 TGATCCCAAAGGAGCGAGAGTTGGTGAAGACTAAAGCCGTCAAAGCCATTTGCTCTTTGT 126
|||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 103 TGATCCCAAAGGAGAGAGAGTTGGTGAAGACTAAAGCCGCCAAAGCCATTTTCTCTTTGT 162
Query 127 TTCGTCC-TCCATGTGATGGTAAACAAAGTTCTCAGCCATCCCGTGACGGTGACTGTGAC 185
| ||||| ||| || || |||||||| ||||||||||||||||||||||||||| |||||
Sbjct 163 TCCGTCCATCC-TGCGACGGTAAACAGAGTTCTCAGCCATCCCGTGACGGTGACGGTGAC 221
Query 186 CGCGATGGCAAGCGCGTGTATCCCACTCGCCCCTGATCGGTCTTTTTCATGGTGTT 241
| || |||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 222 CATGACGGCAAGCGCGTGTATCCCACTCGCTACTGATCGGTCTTTTTCGTGGTGTT 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10908101533
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5