BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921262

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G49525.1 | Symbols:  | unknown protein; Has 23 Blast hits to...   424    3e-118


> AT5G49525.1 | Symbols:  | unknown protein; Has 23 Blast hits 
to 23 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa 
- 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr5:20097040-20097486 REVERSE 
LENGTH=447
Length=447

 Score =  424 bits (229),  Expect = 3e-118
 Identities = 269/288 (93%), Gaps = 4/288 (1%)
 Strand=Plus/Plus

Query  1    AGAAGAAGAGAGCAAAACTTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCG  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| 
Sbjct  89   AGAAGAAGAGAGCAAAAATTGGTGATGTCAGCTTCCCGATGGACGTTGATGGATCTACCA  148

Query  61   TCGTATCTGTCGTCATCGTGGGCATTCCGGTGGCCGGAGGTGAATCTTTCATACCTGAGC  120
            ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct  149  TCGTACCTGTCGTCATCGTGGGCATTCCGGTGGCCGGAGGTGAATCTTTCATCCCTGAGC  208

Query  121  TCTGGTTGGAACATGAGATTGTTGTCGTTGTCGGGTAATCTCTCCATAATCGATGATCTT  180
            |||||||||||||||||||||||||| ||||||||| ||||||||||| | |||||||||
Sbjct  209  TCTGGTTGGAACATGAGATTGTTGTCCTTGTCGGGTGATCTCTCCATAGTTGATGATCTT  268

Query  181  TTGTGGAGTTTTGTCTCGATCGTTGAATCTTTAGCTATCGTTACTACGATCTGTTGCTTC  240
            ||||||||||||||||| ||| |||||||||||||||||  | ||||| |||||||||||
Sbjct  269  TTGTGGAGTTTTGTCTCAATCATTGAATCTTTAGCTATCACTGCTACGGTCTGTTGCTTC  328

Query  241  TTCTTGTTTTGTGGTTGTACCCTTTAATTCCTTCttttttttCATTAT  288
            ||||||||||||||||||||||| |||||||  |||||||  ||||||
Sbjct  329  TTCTTGTTTTGTGGTTGTACCCTCTAATTCC--CTTTTTT--CATTAT  372



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5