BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921297 Length=2120 Score E Sequences producing significant alignments: (Bits) Value AT1G22730.1 | Symbols: | MA3 domain-containing protein | chr1:... 3491 0.0 > AT1G22730.1 | Symbols: | MA3 domain-containing protein | chr1:8046149-8049039 FORWARD LENGTH=2574 Length=2574 Score = 3491 bits (1890), Expect = 0.0 Identities = 2047/2124 (96%), Gaps = 5/2124 (0%) Strand=Plus/Plus Query 1 GATTCGAGAGAGAGTCTAAAATGGAGCACCAAGAAGTTGCTGATTCGA-AAACGGATCCT 59 ||||||||| |||||||||||||||||||||||| || | ||||||| ||| ||||||| Sbjct 203 GATTCGAGATAGAGTCTAAAATGGAGCACCAAGACCTTACAGATTCGAGAAA-GGATCCT 261 Query 60 CTTTGCATTTCTCAATTGAAAATATCTTCTTC-TCT-T-GACCCATTGCCACAGGCGAAC 116 ||||||||||||||||||||||| |||||||| ||| | ||||||||||| ||||| ||| Sbjct 262 CTTTGCATTTCTCAATTGAAAATTTCTTCTTCTTCTCTCGACCCATTGCCTCAGGCCAAC 321 Query 117 ATGACAGCGGATTTATTGAAGAGTCATAGACATTCACCTATAAAAGTGCAAGGGAGTGAA 176 ||| ||| ||||||| ||||||| |||||||||||||||||||||| ||||||||||| Sbjct 322 ATGGCAGAGGATTTAACAAAGAGTCGTAGACATTCACCTATAAAAGTGGAAGGGAGTGAA 381 Query 177 GAAACTTGGGGAGTAGAAGATGATGATGACCTCACTGACCCTAATTTTGATACCGTTGAG 236 |||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||| Sbjct 382 GAAACTTGGGGAGTAGAAGATGATGATGACCTTACTGACCCTATTTTTGATACCATTGAG 441 Query 237 GGCAATGGACATTCAGATCCAACTAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 296 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 442 GGCAATGGACATTCAGATCCAACAAGCTGCTTCGATGCTGATTTAAGTGAGTACAAAAAG 501 Query 297 AAGGCCACGGTAATTGTGGAGGAATACTTTGGCACCAATGATGTTGTCTCAGTTGCTAAT 356 |||||||| ||||| || |||||||||||||||||||||||||||||||| |||| |||| Sbjct 502 AAGGCCACAGTAATCGTTGAGGAATACTTTGGCACCAATGATGTTGTCTCTGTTGTTAAT 561 Query 357 GAACTAAAGGAGCTTGGAATGCCTGAGTACCGTTATTATTTTGTCAAGAAATTAGTCTCC 416 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 562 GAACTAAAGGAGCTTGGAATGGCTGAGTACCGTTATTATTTTGTCAAGAAGTTAGTCTCC 621 Query 417 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTGTCTACGCTT 476 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 622 ATGGCTATGGATAGACATGACAAAGAGAAAGAAATGGCTGCTTTTCTCCTCTCTACCCTT 681 Query 477 TATGCCGACGTCATTGATCCCCCGGAAGTTTACAGAGGTTTTAACAAACTGGTGGCTTCT 536 ||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||| Sbjct 682 TATGCCGACGTCATTGATCCCCCAGAAGTTTACAGAGGTTTCAACAAACTGGTCGCTTCT 741 Query 537 GCTGATGATTTATCTGTAGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 596 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 742 GCTGATGATTTATCTGTTGATATTCCCGATGCAGTTGATGTTCTTGCTGTCTTTGTGGCT 801 Query 597 CGGGCAATTGTTGACGACATTCTTCCACCTGCGTTTCTGAAGAAACAAATGAAATTGCTA 656 |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| Sbjct 802 CGGGCAATTGTTGACGACATTCTTCCTCCTGCGTTTCTCAAGAAGCAAATGAAATTGCTG 861 Query 657 CCAGATCACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCCGAGAAGAGCTATCTAGCGACT 716 |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 862 CCAGATAACTCCAAAGGTGTTGAGGTTTTGAGAAAGGCTGAGAAGAGCTATCTAGCGACT 921 Query 717 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 776 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 922 CCGCTTCATGCTGAAGTTGTTGAGAAGAGATGGGGAGGGACTGATAATTGGACTGCTGAG 981 Query 777 GATGTGAAAGCAAGAATAAACGACTTGCTGAAAGAGTATGTGATGAGTGGAGACAAAAAA 836 ||||||||||| ||||| ||||||||| ||||||||||||| |||||||||||||||||| Sbjct 982 GATGTGAAAGCTAGAATTAACGACTTGTTGAAAGAGTATGTCATGAGTGGAGACAAAAAA 1041 Query 837 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 896 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1042 GAAGCTTTTAGATGCATCAAAGGATTGAAAGTTCCTTTCTTTCATCATGAGATTGTCAAA 1101 Query 897 CGAGCACTGATTATGGCAATGGAAAGGCGAAAAGCTGAAGTCAGGCTGCTAGATCTGTTA 956 ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1102 CGAGCACTGATCATGGCAATGGAAAGGCGAAAAGCTCAAGTCAGGCTGCTAGATCTGTTG 1161 Query 957 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAAGTAACAAAAGGGTTTAGCAGA 1016 |||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| Sbjct 1162 AAAGAAACGATTGAGGTTGGTCTCATAAACTCCACTCAGGTGACAAAAGGGTTTAGCAGA 1221 Query 1017 ATCATTGATTCAATTGAAGATTTGTCTCTTGACATACCAGATGCACGCCGTATATTACAG 1076 |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 1222 ATCATTGATTCAATCGAAGATTTGTCTCTTGACATACCAGACGCACGCCGTATTTTACAG 1281 Query 1077 TCTTTCATCTCTAAAGCAGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1136 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1282 TCTTTCATCTCTAAAGCGGCTTCTGAAGGATGGTTATGTGCTTCTTCTCTGAAATCACTC 1341 Query 1137 TCCGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1196 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1342 TCTGCTGATGCAGGAGAAAAGTTACTTGAAAACTCCAGCGCCAATGTTTTTAAAGACAAG 1401 Query 1197 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1256 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1402 GCGAAGTCGATCATCCGAGAGTATTTCCTTTCAGGTGACACTTCAGAGGTCGTACATTGT 1461 Query 1257 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1316 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 CTAGACACCGAATTGAATGCATCTTCGAGTCAGCTACGCGCAATCTTTGTCAAATATCTG 1521 Query 1317 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1376 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1522 ATAACTCTAGCAATGGACAGGAAGAAAAGAGAGAAGGAGATGGCTTGTGTGCTCGTCTCT 1581 Query 1377 ACTCTTGGTTTCCCTCCAAAAGATGTCAGAAACGCATTCTCGATGCTCATAGAATCTGCA 1436 ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| Sbjct 1582 ACTCTTGGTTTCCCTCCCAAAGATGTCAGAAGCGCATTCTCGATGCTCATAGAATCTGCA 1641 Query 1437 GACGACACGGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCCAGA 1496 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1642 GACGACACTGCTTTGGACAACCCAGTGGTTGTTGAAGACCTTGCCATGTTCTTAGCAAGA 1701 Query 1497 GCTGTGGTTGACGAGGTGTTACCTCCACGGGATTTGGAAGAAGTGTTAAACCAGACTCCC 1556 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 1702 GCTGTGGTTGACGAGGTGTTAGCTCCACGGGATTTGGAAGAAGTGTTAAATCAGACTCCC 1761 Query 1557 GAGGCAGGCTCAAGTGTGGGAGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1616 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1762 GAGGCAGGCTCAAGTGTGGGCGAGAAAGTGATTCAAATGGCGAAAACATTGCTGAAAGCA 1821 Query 1617 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1676 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1822 CGTCTTTCCGGTGAAAGGATCTTACGTTGCTGGGGAGGAGGAGGAATTGAGACAAACTCG 1881 Query 1677 CCAGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1736 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1882 CCGGGATCCACAGTGAAGGAAGTGAAAGAGAAGATCCAGATTCTTCTAGAAGAGTATGTC 1941 Query 1737 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTGAAGGAACTGGGAATGCCGTTTTTT 1796 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 1942 TCTGGTGGAGACCTCAGAGAAGCTAGTAGGTGCGTAAAGGAACTAGGAATGCCGTTTTTT 2001 Query 1797 CACCATGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 1856 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2002 CACCACGAAGTAGTGAAGAAGTCAGTAGTGAGGATCATAGAAGAGAAGGAGAACGAGGAA 2061 Query 1857 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 1916 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2062 CGGTTATGGAAGCTACTAAAAGTGTGTTTTGATTCAGGACTAGTGACGATATATCAGATG 2121 Query 1917 ACTAAAGGGTTTAAAAGAGTTGATGAATCGCTTGAAGATCTGTCTTTGGATGTCCCTGAT 1976 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2122 ACTAAAGGGTTTAAAAGAGTTGATGAATCACTTGAAGATCTGTCTTTGGATGTCCCTGAT 2181 Query 1977 GCTGCGAAAAAGTTTTCAAGTTGCGTCGAAAGAGGCAAGCTTGAAGGGTTCTTAGACGAA 2036 ||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||| Sbjct 2182 GCTGCCAAAAAGTTTTCAAGTTGCGTTGAAAGAGGCAAGCTTGAAGGGTTCTTGGACGAA 2241 Query 2037 TCATTCGCTTGTGAGGAATCACAAAGTAAGAAACAGAACGGCTCGTCTTCTTCGTCTGGA 2096 |||||||||| |||||| || |||||||||||||||||||||||||||||||| |||||| Sbjct 2242 TCATTCGCTTCTGAGGATTCGCAAAGTAAGAAACAGAACGGCTCGTCTTCTTCCTCTGGA 2301 Query 2097 TGATAACATTTGAGCACCAAACCT 2120 ||||||||||||||||||| |||| Sbjct 2302 TGATAACATTTGAGCACCATACCT 2325 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 105119941230 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5