BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921317 Length=800 Score E Sequences producing significant alignments: (Bits) Value AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1175 0.0 > AT1G22910.3 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr1:8105589-8108164 FORWARD LENGTH=1478 Length=1478 Score = 1175 bits (636), Expect = 0.0 Identities = 748/800 (94%), Gaps = 15/800 (2%) Strand=Plus/Plus Query 7 GATCGGAGa--aaaaaaTGGCGGGAGGAATAGGGTTAGGAGACACGACGCACACGAAGGT 64 ||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||||| Sbjct 204 GATCGGAGAGGAAAAAATGGCGGGAGGAATAGGGCTGGGAGACACGACATACACGAAGGT 263 Query 65 GTTTGTGGGAGGATTAGCTTGGGAGACACATAAGGAGACGATGAAGAAGCACTTTGAGCA 124 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 264 GTTTGTGGGAGGATTAGCTTGGGAGACGCATAAGGAGACGATGAAGAAGCACTTTGAGCA 323 Query 125 GTTTGGAGAGATTTTGGAAGCTGTGGTTATCACCGACAAGGCCTCTGGCAGATCCAAGGG 184 ||||||||||||||||||||| || || ||||||||||||||||| || ||||||||||| Sbjct 324 GTTTGGAGAGATTTTGGAAGCCGTAGTCATCACCGACAAGGCCTCCGGTAGATCCAAGGG 383 Query 185 CTACGGATTTGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGAGCTTGTGTGGAGGCTAC 244 ||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 384 CTACGGATTCGTGACATTCAGGGAAGCGGAGGCGGCGAGGAGTGCTTGTGTGGATGCTAC 443 Query 245 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTTGCCTCTCTCGGTCTTCAAAGATC 304 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 444 TCCGGTGATCGACGGGAGAAGAGCAAATTGCAACCTCGCCTCTCTCGGTCTTCAAAGATC 503 Query 305 CAAACCATCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 364 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 504 CAAACCCTCCACTCCTAACCATGGAGGAGGAGGCAGGATTAACAATATGAGAGTGATGAT 563 Query 365 GAGCACAATGCAGACTGGTTTTGGaccacctccaccaccaccacaaccacccaccTTCCC 424 ||||||||||||||||||||||||||||||||||||||||| | | |||||||||||| | Sbjct 564 GAGCACAATGCAGACTGGTTTTGGACCACCTCCACCACCAC-A-A-CCACCCACCTTCAC 620 Query 425 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGATTACTT 484 |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 621 TCACTATCCCCATCTCCCTCTCAATCTCTTTGGGTACTCTCCATACTCGCCAGACTACTC 680 Query 485 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGTACTTCTGGAGGACAATACGGAGT 544 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 681 ATCATTCCCTACGAACTTATACGGCATGTACGGCTGCACTTCTGGAGGACAATACGGAGT 740 Query 545 CTATGGAAACCGAAACGGTGGAGGCGGTGGACTAACGGCAGCAGCCGCATCTGCCGCTCC 604 |||||||||| ||||| | ||||||||||||||||| |||||||||||||| || |||| Sbjct 741 CTATGGAAACAGAAACAGCGGAGGCGGTGGACTAACCGCAGCAGCCGCATCCGCTACTCC 800 Query 605 TTTTTATCCTTGCGGTGGAGTACATGCACATGCTGGAGTCCAGTTCTCTCAGCCACAACC 664 |||||||||||| ||||||| ||||| || || |||||||||||||| |||||||| Sbjct 801 TTTTTATCCTTGTGGTGGAGGACATGG---TG--GG-GTCCAGTTCTCTCAACCACAACC 854 Query 665 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCAGACCTTTTCTAT 724 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 855 ATTTTATCATCACTTGTCTTCTTATAACCCTCACCATTACTCTCCTCCGACCTTTTCTAT 914 Query 725 GCAACAAGG--CG--TAACCGGCTTTCCCCTTCAGGCACCTCTCATTCCTTACCGTTAAA 780 ||||||||| || |||| |||||||| ||||| ||||||| |||||||||||||||| Sbjct 915 GCAACAAGGTTCGCGTAACAGGCTTTCCGCTTCAACCACCTCTTATTCCTTACCGTTAAA 974 Query 781 GAAGCTTAGAGTCATTGGTA 800 ||||||||||||| |||||| Sbjct 975 GAAGCTTAGAGTCTTTGGTA 994 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 38931463925 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5