BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg921472

Length=1205
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G24140.1 | Symbols:  | Matrixin family protein | chr1:853604...  1700    0.0  


> AT1G24140.1 | Symbols:  | Matrixin family protein | chr1:8536045-8537387 
REVERSE LENGTH=1343
Length=1343

 Score = 1700 bits (920),  Expect = 0.0
 Identities = 1115/1209 (92%), Gaps = 14/1209 (1%)
 Strand=Plus/Plus

Query  1     TTTTAATCTTTTTGTTTCAAATGATGAGGATTTATGTTTCCGTGGTTTTCTTGGTGTTCT  60
             ||||||| ||| | |||   ||| ||||||||| ||||| | ||||||||||| ||||||
Sbjct  83    TTTTAATATTTCTCTTTTGGATGGTGAGGATTTGTGTTTTCATGGTTTTCTTGTTGTTCT  142

Query  61    TTGTTCCTTCTCCAGTCTCTGCTGGTTTCTACCCCAACTCCTCAGCCATTCCGCCGGAGC  120
             | | ||||||||||||||| |||||||||||  | ||||||||||||||||||||| |||
Sbjct  143   TCGCTCCTTCTCCAGTCTCCGCTGGTTTCTATACAAACTCCTCAGCCATTCCGCCGCAGC  202

Query  121   TTCTCCGTAACGCCACCGGAAACCCCTGGAACTCATTCTTGAATTTCACCGGATGTCATG  180
             ||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||||| |
Sbjct  203   TTCTCCGAAACGCCACCGGGAACCCCTGGAACTCATTCTTGAATTTCACTGGATGTCACG  262

Query  181   CCGGCAAGAAATACGATGGTCTCTACAAGCTTAAACAATATTTCCAACATTTTGGCTACA  240
             |||||||||| |||||||||||||| | ||| ||||||||||| ||||||||||||||||
Sbjct  263   CCGGCAAGAAGTACGATGGTCTCTATATGCTCAAACAATATTTTCAACATTTTGGCTACA  322

Query  241   TCCCCAAAACTGATCTCTCCGGAAACTTCACAGACGACTTCGACGATATCCTCAAGAACG  300
             || || ||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct  323   TCACCGAAACTAATCTCTCCGGAAACTTCACTGACGACTTCGACGATATTCTCAAGAACG  382

Query  301   CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA  360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  383   CCGTCGAAATGTACCAGAGAAACTTCCAGCTAAACGTCACCGGAGTACTCGACGAGCTCA  442

Query  361   CTCTCAAACACGTCGTGATCCCGCGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA  420
             ||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  443   CTCTCAAACACGTTGTGATCCCACGTTGCGGCAACCCCGACGTAGTCAACGGCACCTCAA  502

Query  421   CTATGCATAGCGGTAGAAAAACCTTCGAGGTCTCCTTCGCCGGGCGGGGACAACACTTCC  480
             |||||||||||||||| |||||||||||||| |||||||||||||||||||||| |||||
Sbjct  503   CTATGCATAGCGGTAGGAAAACCTTCGAGGTTTCCTTCGCCGGGCGGGGACAACGCTTCC  562

Query  481   ACACTGTCAAACACTACTCTTTCTTCCCCGGTGAGCCACGGTGGCCGAGAAATCGCCGTG  540
             || | || ||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct  563   ACGCCGTTAAACACTACTCTTTCTTCCCCGGAGAGCCACGGTGGCCGAGAAATCGTCGTG  622

Query  541   ATCTAACATACGCTTTCGACCCGCGAAACTCGTTGACAGAAGAGGTCAAGAGTGTGTTCT  600
             ||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||||||
Sbjct  623   ATCTAACCTACGCTTTCGACCCGCGAAACGCGTTGACCGAAGAGGTCAAGAGCGTGTTCT  682

Query  601   CACGCGCGTTCGCTCGTTGGGCGGAGGTGACTCCACTAACGTTCACGCGCGTGGAAAGGT  660
             ||||||| ||| ||||||||| |||||||||||||||||||||||| |||||||| ||||
Sbjct  683   CACGCGCTTTCACTCGTTGGGAGGAGGTGACTCCACTAACGTTCACACGCGTGGAGAGGT  742

Query  661   TCTCGACCTCCGACATAAGCATCGGATTCTACTCCGGCGAACACGGCGACGGAGAACCAT  720
             |||||||||| ||||| |||||||||||||||||||| || ||||| ||||||||||| |
Sbjct  743   TCTCGACCTCTGACATCAGCATCGGATTCTACTCCGGAGAGCACGGAGACGGAGAACCGT  802

Query  721   TTGACGGCCCAATGAGAACGCTAGCACACGCATTCTCGCCCCCGACAGGATACTTCCACC  780
             | |||||||||||||||||||||||||| || |||||||||||||| ||| ||||||| |
Sbjct  803   TCGACGGCCCAATGAGAACGCTAGCACATGCGTTCTCGCCCCCGACGGGACACTTCCATC  862

Query  781   TAGACGGAGAAGAGAACTGGATCGTCTCCGGTGAAGGAGGCGACGGTTTTATCTCCGTCG  840
             ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct  863   TAGACGGAGAAGAGAACTGGATCGTCTCCGGCGAAGGAGGCGACGGTTTTATCTCCGT-G  921

Query  841   A-TGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATCGGACATCTTCTAGGGTTA  899
               ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  922   TCTGAGGCTGTTGATCTAGAATCGGTGGCTGTTCACGAGATTGGACATCTTCTAGGGTTA  981

Query  900   GGCCATTCCTCGGTGGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGACGTAAA  959
             |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  982   GGCCATTCCTCGGTAGAAGGTTCGATCATGTATCCAACCATCAGGACGGGTAGGCGTAAA  1041

Query  960   GTTGCTTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGGGAATCCTAAC  1019
             |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  1042  GTTGATTTAACGACCGATGACGTGGAAGGAGTCCAATATTTGTACGGTGCGAATCCTAAC  1101

Query  1020  TTTAACGGCTCTAGATCTCCATCACCGTCTACTCAACAACGAGACACTGGCGATTCCGGT  1079
             || || || |||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct  1102  TTCAATGGTTCTAGATCTCCACCACCGTCCACTCAACAACGAGACACTGGCGATTCTGGT  1161

Query  1080  GCTGCTGGTAGAAACGACGGTTCTAGATCGGTTTTGACTAATCTACTTCTGTATTAT---  1136
             ||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||   
Sbjct  1162  GCTCCTGGTAGAAGCGACGGTTCTAGATCGGTTTTGACTAATCTACTTCAGTATTATTTT  1221

Query  1137  ---ATT-T----GGATTATTTTCGTATTTAGTGTAGATGATTGGATTAGTTCAT-AATTT  1187
                ||| |    |||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct  1222  TGGATTATATTTGGATTATTTTTGTATTTAGTGTAGATGATTGGATTAGTTCATTAATTT  1281

Query  1188  ACAGATTAT  1196
             |||||||||
Sbjct  1282  ACAGATTAT  1290



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 59186442555


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5