BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921504 Length=1770 Score E Sequences producing significant alignments: (Bits) Value AT1G27200.1 | Symbols: | Domain of unknown function (DUF23) | ... 2789 0.0 > AT1G27200.1 | Symbols: | Domain of unknown function (DUF23) | chr1:9449549-9451750 REVERSE LENGTH=2202 Length=2202 Score = 2789 bits (1510), Expect = 0.0 Identities = 1690/1776 (95%), Gaps = 15/1776 (1%) Strand=Plus/Plus Query 1 GTTTCAATTTTTCTTGAAGAAGATGATGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 60 ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| Sbjct 193 GTTTCAATTTTTCTT---GAAGATGACGGAGTATGAGAATGGGAAGAAGAGGAAAGTACG 249 Query 61 AAACAAACAACAAGTAAAAGGACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTGCTG 120 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 250 AAACAAACAACAAGTAAAAGTACAGTTCTTGTCTCAAAGGTATCTAATCTTATGCTTTTG 309 Query 121 CTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAAtctctacactctctgttcg 180 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 310 TTGTTTCTTCGTCTTGCTCTTCTTCTTATCTTCCGACCGAATCTCCACACTCTCTGTTCG 369 Query 181 ttctgattctctgagaccgtctcttcgtgttcctgctctctctgTTTTATCATCATCCAT 240 ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| Sbjct 370 TTCCGATTCTCTGAGACCGTCTCTTCGTGTTCCTACTCTCTCCGTTTTATCATCATCCAT 429 Query 241 GGATTCGTTTCACGGTGGTAGATTCCTTGCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 300 ||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||| Sbjct 430 GGATTCGTTTCACCGTGGTAGATTCCCTCCGTTGAGTGTTGAAGACAGAGTTCAATTCCC 489 Query 301 CGACCATTTATTGCTGATTCTTTCGCACGGAATTAGGAGAGGTGaaaaaaaCCTAGTTTG 360 ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 490 TGACCATTTATTGCTGATTCTTTCGCACGGAATTGGGAAAGGTGAAAAAAACCTAGTTTG 549 Query 361 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 550 TGTTTATCGTGGAGTAAAGGAAGAGACTTTGGTGTTGCCCTCGATTTCTAGTGATGAATT 609 Query 421 CGATGAGTTTAGATCGATTGTTCGATGCCCTAATGCTCCTTTGAACTATTCTTCATCTGT 480 |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 610 CGATGAGTTTAGGTCGATTGTTCGATGTCCTAATGCTCCTTTGAACTATTCTTCATCTGT 669 Query 481 TGAGTTGCAATTTCGTGGAGATTTGGTGAAGAAGATGAAGAAGGAGAAGCAGAGCCGCCG 540 ||| |||||||| |||||||||||||||||||||| || ||| || || |||| |||| Sbjct 670 TGATTTGCAATTCCGTGGAGATTTGGTGAAGAAGAAGATGAA-GA-AA-CAGA---GCCG 723 Query 541 TCGTGTTCATAATTGGGAAAAAGTTGGTTACGAGGCGGTGATTGACGGCGACACGGTGGT 600 ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| Sbjct 724 TCGTGTTCATAATTGGGAAAAGGTTGGTTATGAGGCGGTGATTGACGGCGACACGGTGGT 783 Query 601 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 660 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 784 TGTGTTTGTTAAAGGATTGACTCGAAGACCTCACAAGGAATCAGATCCTTCTTACTATAA 843 Query 661 ATGTCAATTTGAGATTGGGGATTTGGAGGAGAAAGAGGTGACTCAAGCTGTTGCTGCAGC 720 |||||||||||||||| | ||| ||||||||||||||||||||||||| ||||||| || Sbjct 844 GTGTCAATTTGAGATTGAGAATTCGGAGGAGAAAGAGGTGACTCAAGCTATTGCTGCTGC 903 Query 721 GCAAGAAGTTGTGAGGTGTGTTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 780 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 904 GCAAGAAGTTGTGAGGTGTGGTTTGCCTGAGAGTTTGAAGCTAAATCCAGAGATGATGTT 963 Query 781 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACGCCTGCTCTGCCTTCCGT 840 |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || Sbjct 964 TCGAGTGAGTGTAATTCACATTGATCCTAGAGGAAGAACTACCCCTGCTCTGCCTTCGGT 1023 Query 841 TGCGAGAATCTACGGTTCTGATTCGATT---CAG-A--AGAAGAAGAGTGGGGTTAAGCA 894 |||||||||||||||||||||||||||| || | ||||||||||||| |||||||| Sbjct 1024 TGCGAGAATCTACGGTTCTGATTCGATTGAGAAGAAGGAGAAGAAGAGTGGAGTTAAGCA 1083 Query 895 TGAGCTTTGTGTTTGTACAATGCTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 954 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 1084 TGAGCTTTGTGTTTGTACAATGTTATGGAACCAAGCTCCGTTCTTGCGTGAATGGATCAT 1143 Query 955 GTATCATTCGTGGCTTGGTGTTGAACGTTGGTTTATATATGATAACAATAGCGATGATGC 1014 |||||| |||||||| ||||| |||||||||||||||||||||||||| |||||||||| Sbjct 1144 GTATCACTCGTGGCTCGGTGTCGAACGTTGGTTTATATATGATAACAACAGCGATGATGG 1203 Query 1015 TATACAAGAGGAGATTGAGTTGCTTAGTTTGGAGAATTACAATGTGAGTCGACATGTTTG 1074 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1204 TATACAAGAGGAGATTGAGTTGCTTAGTTCGGAGAATTACAATGTGAGTCGACATGTTTG 1263 Query 1075 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCAAAAGAAGA 1134 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1264 GCCTTGGATCAAGACTCAAGAAGCCGGTTTTTCGCATTGTGCGGTTAGAGCGAAAGAAGA 1323 Query 1135 ATGTAATTGGGTTGGATTCTTTGATGTTGACGAGTTCTACTACTTCCCTACGCATCGCTC 1194 ||| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1324 ATGCAATTGGGTTGGATTCTTCGATGTCGACGAGTTCTACTACTTCCCTACGCATCGCTC 1383 Query 1195 TCAAGGCTTACCGAGCAAAGACGCTTTGAAATCGCTTGTATCGAACTACACTTCTTGGGA 1254 ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| Sbjct 1384 TCAAGGCTTACCGAGCAAAAACGCTTTGAAGTCGCTTGTATCGAACTACACTTCTTGGGA 1443 Query 1255 TTTGGTTGGAGAGATCCGAACGGATTGTCATAGTTATGGTCCGTCCGGTCTAACCTCGGT 1314 |||||||||||||||| ||||||| |||||||| || ||||| |||||||| |||||||| Sbjct 1444 TTTGGTTGGAGAGATCAGAACGGACTGTCATAGCTACGGTCCATCCGGTCTGACCTCGGT 1503 Query 1315 TCCATCTCAAGGCGTGACGGTTGGGTACACTTGTAGACAAGCGAACCCTGAGAGACATAA 1374 |||||| ||||||||||| || || ||||||||||||||||||||||| |||||||| || Sbjct 1504 TCCATCACAAGGCGTGACCGTAGGTTACACTTGTAGACAAGCGAACCCCGAGAGACACAA 1563 Query 1375 GTCGATAGTCCGACCTGAATTGCTCACAAGCTCATTGCTCAACGAAGTTCATCATTTTCA 1434 ||||||| |||| ||||| ||||||||||||||||||||||| ||||| ||||||||||| Sbjct 1564 GTCGATAATCCGCCCTGAGTTGCTCACAAGCTCATTGCTCAATGAAGTACATCATTTTCA 1623 Query 1435 GTTGAAAGAAGGAGTCGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1494 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1624 GTTGAAAGAAGGAGTGGGGCATATGAGTTTGGTGGAGAGTGTTGCGGTAGTGAACCATTA 1683 Query 1495 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1554 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1684 CAAGTACCAAGTTTGGGACACTTTCAAAGCTAAGTTTTACAGAAGAGTGGCTACTTATGT 1743 Query 1555 TGTGGACTGGCAAGAGAATCAAAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1614 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 1744 TGTTGACTGGCAAGAGAATCAGAATCAAGGGTCTAAAGATCGAGCTCCAGGGCTCGGGAC 1803 Query 1615 AGAGGCAATCGAGCCGCCGGATTGGAAACGTCGGTTCTGTGAAGTGTGGGATACTGGATT 1674 |||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 1804 AGAGGCAATCGAGCCGCCGGATTGGAAACGACGGTTCTGTGAAGTGTGGGACACTGGATT 1863 Query 1675 GAAGGATTTGGTTTTGTCGAATTTTGCTGATCAAGTGACTGGTTATTTGCCGTGGCAGAG 1734 ||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1864 GAAGGATTTGGTTATGTCGAATTTTGCTGATCAAGTGACTGGTTATCTGCCGTGGCAGAG 1923 Query 1735 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1770 |||||||||||||||||||||||||||||||||||| Sbjct 1924 GCAACAACAAGAATGACTTTTAGTTGGTTTCTGATT 1959 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 87549750480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5