BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921631
Length=616
Score E
Sequences producing significant alignments: (Bits) Value
AT1G14800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pr... 691 0.0
AT1G54430.1 | Symbols: | transposable element gene | chr1:2031... 669 0.0
AT3G30420.1 | Symbols: | transposable element gene | chr3:1205... 553 8e-157
> AT1G14800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:5099572-5102558 FORWARD LENGTH=1155
Length=1155
Score = 691 bits (374), Expect = 0.0
Identities = 493/549 (90%), Gaps = 13/549 (2%)
Strand=Plus/Plus
Query 21 ATGGCTGCAGTTGATGTTGTTCCAATTCCTACTAATGCAAACTATGTTGCTTTTGATGAT 80
||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||||| |
Sbjct 1 ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCT 60
Query 81 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGTCTACTTCGTTTTTGGGATGCT 140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCT 120
Query 141 CGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAAA 200
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 121 CGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAA 180
Query 201 TGCTCAGTAATCCATGCTTTTATCCCAGCAGCTCTTGCCTCACAATTCCGTCAAGTTTTG 260
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 181 TGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTG 240
Query 261 CGTGAAGGTTCTA-TCTACAATATTAGCGGGTTTGAAGTGGGACGGTGCACAAAACTCTA 319
|||||||| || ||| |||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 241 CGTGAAGGCA-TAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAACTCTA 299
Query 320 CAAGATCACTGACCATCCTTTTCTCCTACGTTTTCTCCCTGCCACAACGACTGTAGAACT 379
||||||||||||||||||||||||||| |||||||||||||||||||||| | | ||| |
Sbjct 300 CAAGATCACTGACCATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAAGT 359
Query 380 TTCAGATGTTGGCCCTACAATTGA-ACGGGAACAATTCATGCTACGTAATTTTGACAACC 438
|||||||||||||||||||||||| | ||||| |||| ||||||||||| ||||||||||
Sbjct 360 TTCAGATGTTGGCCCTACAATTGAGA-GGGAAAAATTTATGCTACGTAACTTTGACAACC 418
Query 439 TACAAGCTCTAGCTAACACCAACATTGAACTTCCTGATGTTGTAGGCCAAATCTCCTTCA 498
| |||||||| ||||||||||||||||||||||||| | ||||||| | |||
Sbjct 419 TTCAAGCTCTTGCTAACACCAACATTGAACTTCCTG--G-------CCAAATCACTTTCG 469
Query 499 TCCAAGGGTCGAACCTGAATGACCCAACTTCCACTCAACGTTTGGTTTTGCGTTACCGTA 558
|||||||||| ||| ||||||| |||||||| |||||||||||||||||||| ||||| |
Sbjct 470 TCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCGGA 529
Query 559 TCGATACGT 567
| ||| |||
Sbjct 530 TTGATTCGT 538
> AT1G54430.1 | Symbols: | transposable element gene | chr1:20313856-20319554
REVERSE LENGTH=4920
Length=4920
Score = 669 bits (362), Expect = 0.0
Identities = 490/550 (89%), Gaps = 15/550 (3%)
Strand=Plus/Plus
Query 21 ATGGCTGCAGTTGATGTTGTTCCAATTCCTACTAATGCAAACTATGTTGCTTTTGATGAT 80
||||||| ||||||||||||| |||||||| |||| ||||||||||| |||||||||| |
Sbjct 1 ATGGCTGAAGTTGATGTTGTTGCAATTCCTTCTAAAGCAAACTATGTAGCTTTTGATGCT 60
Query 81 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGTCTACTTCGTTTTTGGGATGCT 140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 61 TTACGTCTTGGTCGCTCTACTCAACAGGTTGTTGGTCGCCTACTTCGTTTTTGGGATGCT 120
Query 141 CGCAACATCAAGAAAGATGGTCAATTCATGGGGATAGTCCTCCTTTTACTCGATGAAAAA 200
|||||||||||||||||||| ||||||||||| ||||||||||| ||||| |||||||||
Sbjct 121 CGCAACATCAAGAAAGATGGCCAATTCATGGGCATAGTCCTCCTGTTACTTGATGAAAAA 180
Query 201 TGCTCAGTAATCCATGCTTTTATCCCAGCAGCTCTTGCCTCACAATTCCGTCAAGTTTTG 260
||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 181 TGCTCCGTAATCCATGCTTTTATCCCAGCAGCTCTTGCTTCACATTTCCGCCAAGTTTTG 240
Query 261 CGTGAAGGTTCTA-TCTACAATATTAGCGGGTTTGAAGTGGGACGGTGCAC-AAAACTCT 318
|||||||| || ||| |||| |||| ||||||||||||||||| ||||| |||| |||
Sbjct 241 CGTGAAGGCA-TAATCTTCAATGTTAGTGGGTTTGAAGTGGGACGTTGCACGAAAA-TCT 298
Query 319 ACAAGATCACTGACCATCCTTTTCTCCTACGTTTTCTCCCTGCCACAACGACTGTAGAAC 378
|||||||||||||| ||||||||||||| |||||||||||||||||||||| | | |||
Sbjct 299 ACAAGATCACTGACAATCCTTTTCTCCTCCGTTTTCTCCCTGCCACAACGATTATTGAAG 358
Query 379 TTTCAGATGTTGGCCCTACAATTGA-ACGGGAACAATTCATGCTACGTAATTTTGACAAC 437
||||||||||||||||||||||||| | | ||| |||| ||||||||||| |||||||||
Sbjct 359 TTTCAGATGTTGGCCCTACAATTGAGA-GTGAAAAATTTATGCTACGTAACTTTGACAAC 417
Query 438 CTACAAGCTCTAGCTAACACCAACATTGAACTTCCTGATGTTGTAGGCCAAATCTCCTTC 497
|| |||||||| ||||||||||| ||||||||||||| | ||||||| | |||
Sbjct 418 CTTCAAGCTCTTGCTAACACCAATATTGAACTTCCTG--G-------CCAAATCACTTTC 468
Query 498 ATCCAAGGGTCGAACCTGAATGACCCAACTTCCACTCAACGTTTGGTTTTGCGTTACCGT 557
|||||||||| ||| ||||||| |||||||| |||||||||||||||||||| |||||
Sbjct 469 GTCCAAGGGTCAAACTTGAATGATCCAACTTCTACTCAACGTTTGGTTTTGCGATACCGG 528
Query 558 ATCGATACGT 567
|| ||| |||
Sbjct 529 ATTGATTCGT 538
> AT3G30420.1 | Symbols: | transposable element gene | chr3:12057058-12060589
FORWARD LENGTH=2514
Length=2514
Score = 553 bits (299), Expect = 8e-157
Identities = 411/463 (89%), Gaps = 15/463 (3%)
Strand=Plus/Plus
Query 108 GTTGTTGGTCGTCTACTTCGTTTTTGGGATGCTCGCAACATCAAGAAAGATGGTCAATTC 167
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 13 GTTGTTGGTCGCCTACTTCGTTTTTGGGATGCTCGCAACATCAAGAAAGATGGCCAATTC 72
Query 168 ATGGGGATAGTCCTCCTTTTACTCGATGAAAAATGCTCAGTAATCCATGCTTTTATCCCA 227
||||| ||||||||||| ||||| |||||||||||||| | |||||||||||||||||||
Sbjct 73 ATGGGCATAGTCCTCCTGTTACTTGATGAAAAATGCTCCGAAATCCATGCTTTTATCCCA 132
Query 228 GCAGCTCTTGCCTCACAATTCCGTCAAGTTTTGCGTGAAGGTTCTA-TCTACAATATTAG 286
||||||||||| ||||| ||||| ||||||||||||||||| || ||| |||| ||||
Sbjct 133 GCAGCTCTTGCTTCACATTTCCGCCAAGTTTTGCGTGAAGGCA-TAATCTTCAATGTTAG 191
Query 287 CGGGTTTGAAGTGGGACGGTGCACAAAACTCTACAAGATCACTGACCATCCTTTTCTCCT 346
||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 192 TGGGTTTGAAGTGGGACGTTGCACGAAACTCTACAAGATCACTGACCATCCTTTTCTCCT 251
Query 347 ACGTTTTCTCCCTGCCACAACGACTGTAGAACTTTCAGATGTTGGCCCTACAATTGA-AC 405
|||||||||||||||||||||| | | ||| ||||||||||||||||||||||||| |
Sbjct 252 CCGTTTTCTCCCTGCCACAACGATTATTGAAGTTTCAGATGTTGGCCCTACAATTGAGA- 310
Query 406 GGGAACAA-TTCATGCTACGTAATTTTGACAACCTACAAGCTCTAGCTAACACCAACATT 464
||||| || || ||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 311 GGGAA-AAGTTTATGCTACGTAACTTTGACAACCTTCAAGCTCTTGCTAACACCAACATT 369
Query 465 GAACTTCCTGATGTTGTAGGCCAAATCTCCTTCATCCAAGGGTCGAACCTGAATGACCCA 524
|||||||| | | | ||||||| | ||| |||||||||| ||| ||||||| |||
Sbjct 370 GAACTTCC--A-G--G----CCAAATCACTTTCGTCCAAGGGTCAAACTTGAATGATCCA 420
Query 525 ACTTCCACTCAACGTTTGGTTTTGCGTTACCGTATCGATACGT 567
||||| |||||||||||||||||||| ||||| || ||| |||
Sbjct 421 ACTTCTACTCAACGTTTGGTTTTGCGATACCGGATTGATTCGT 463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29688380877
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5