BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921636 Length=1660 Score E Sequences producing significant alignments: (Bits) Value AT1G26230.1 | Symbols: | TCP-1/cpn60 chaperonin family protein... 1362 0.0 AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1... 178 2e-43 > AT1G26230.1 | Symbols: | TCP-1/cpn60 chaperonin family protein | chr1:9072256-9075307 REVERSE LENGTH=2003 Length=2003 Score = 1362 bits (737), Expect = 0.0 Identities = 889/958 (93%), Gaps = 28/958 (3%) Strand=Plus/Plus Query 1 CCTTGCTCGTTTTAACGGCAATGGC--T-T--C---CT-CACTCTCTGCGTTGCCTTTTT 51 |||||||| |||||||||||||||| | | | || | ||||||||||||||| ||| Sbjct 16 CCTTGCTCTTTTTAACGGCAATGGCTTTCTCACAAGCTGCTCTCTCTGCGTTGCCTCTTT 75 Query 52 CTGATCGAACTTTCCGTAAAAAG-------C--CTTC-T--TCTT---CGAATTTC-TTC 95 |||||||||||||||| |||||| | |||| | |||| |||||||| || Sbjct 76 CTGATCGAACTTTCCGCAAAAAGCCATCTTCTTCTTCTTCATCTTCACCGAATTTCGTT- 134 Query 96 CTTAGAGCAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCGCTGTCACCAAG 155 || |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 135 CTGAGAGTAAGAGCTGCTGCAAAAGAAGTTCACTTTAACCGTGATGGCTCTGTCACCAAG 194 Query 156 AAGCTTCAGGCAGGTGCAGATATGGTCGCTAAGCTATTAGGCGTGACATTAGGTCCAAAG 215 |||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||| Sbjct 195 AAGCTTCAGGCAGGTGCAGATATGGTGGCTAAACTATTAGGCGTGACGTTAGGTCCAAAG 254 Query 216 GGACGAAACATAGTGTTGCAGAACAAGTACGGACCTCCCAAGATCGTCAATGATGGTGAA 275 ||||||||| | |||||||||||||||||||| ||||| | ||| |||||||| |||||| Sbjct 255 GGACGAAACGTGGTGTTGCAGAACAAGTACGGGCCTCCTAGGATTGTCAATGACGGTGAA 314 Query 276 ACTGTTCTTAAAGAGATTGAATTGGAGGATCCTTTAGAGAATGTTGGAGTGAAACTTGTG 335 ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| Sbjct 315 ACTGTTCTTAAAGAGATTGAATTGGAGGACCCGTTAGAGAATGTTGGAGTGAAACTTGTG 374 Query 336 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCGGGTGATGGTTCCACTACATCTATAATT 395 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 375 AGGCAAGCGGGTGCTAAGACTAATGACCTTGCCGGTGATGGTTCCACTACATCTATAATT 434 Query 396 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGGTTTCTGCTGGAACAAATCCCATC 455 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 435 CTTGCTCATGGCCTTATTACTGAAGGTATTAAGGTGATTTCTGCTGGAACAAATCCCATC 494 Query 456 CAAGTGGCCCGTGGTATTGAGAGAACCGCAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 515 ||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 495 CAAGTTGCCCGTGGTATTGAGAAAACCACAAAAGCTCTTGTTTTAGAGCTCAAGTCAATG 554 Query 516 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCCGGGAATGAC 575 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 555 TCCAGAGAGATTGAAGATCATGAGCTTGCTCATGTTGCAGCAGTTAGTGCGGGGAATGAC 614 Query 576 TACGAAGTTGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 635 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 615 TACGAAGTGGGAAACATGATTTCCAATGCTTTTCAACAAGTAGGAAGGACTGGTGTAGTA 674 Query 636 ACAATAGAGAAAGGAAAATACCTAGTGAACAATCTTGAGATTGTCGAAGGAATGCAGTTT 695 ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 675 ACAATAGAGAAAGGAAAATACCTTGTGAACAATCTCGAGATTGTGGAAGGAATGCAGTTT 734 Query 696 AATCGTGGTTATTTATCGCCTTACTTTGTCACTGACCGAAGGAAGAGGGAAGCTGAATTC 755 |||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 735 AATCGTGGCTACTTATCGCCATACTTTGTCACTGATCGAAGGAAGAGGGAAGCTGAATTC 794 Query 756 CATGATTGCAAGCTGCTTTTGGTTGATAAGAAAATAACAAATCCAAAAGACATGTTCAAG 815 ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 795 CATGATTGCAAGCTGCTTTTGGTAGATAAGAAAATAACAAATCCAAAAGATATGTTCAAG 854 Query 816 ATATTGGATTCTGCTGTTAAAGAGGCCTTTCCAGTTCTTATAGTTGGCGAAGATATTGAG 875 ||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||| Sbjct 855 ATATTGGATTCTGCTGTTAAAGAGGAATTTCCAGTTCTAATAGTTGCCGAAGATATTGAG 914 Query 876 CAAGACGCTCTTGCTCCTGTTATTAGGAACCAACTAAAAGGTAATCTGA-GCGTGGCA 932 |||||||||||||||||||||||||||||| ||||||||||||| |||| | |||||| Sbjct 915 CAAGACGCTCTTGCTCCTGTTATTAGGAACAAACTAAAAGGTAACCTGAAG-GTGGCA 971 Score = 1197 bits (648), Expect = 0.0 Identities = 688/708 (97%), Gaps = 0/708 (0%) Strand=Plus/Plus Query 933 AAAGCAGTCGAGGAAAGGGTTTCTCAGATCAAAAATCTTATCCAGAACACCGAGGAGAAT 992 ||||||||||| ||||||||||| ||||| |||||||||||| ||||||||||||||||| Sbjct 1167 AAAGCAGTCGACGAAAGGGTTTCGCAGATTAAAAATCTTATCGAGAACACCGAGGAGAAT 1226 Query 993 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1227 TTTCAGAAGAAGATCCTCAATGAAAGAGTAGCCAGATTATCTGGTGGAATTGCAATAATC 1286 Query 1053 CAGGTAGGTGCACAGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1112 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1287 CAGGTAGGTGCACTGACACAAGTTGAGTTGAAGGATAAACAGCTAAAGGTTGAAGATGCC 1346 Query 1113 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1172 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1347 CTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGTGGTTGCGCCCTC 1406 Query 1173 TTGCAACTGGCTACAAAAGTGGACAGAATTAAAGACACCCTTGACAACACAGAACAGAAG 1232 |||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 1407 TTGCGACTGGCTACAAAAGTGGACAGAATCAAAGAGACCCTTGACAACACAGAACAGAAG 1466 Query 1233 ATTGGAGCTGAAATATTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1292 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1467 ATTGGAGCTGAAATCTTCAAGAAAGCATTGAGCTACCCCATAAGACTTATAGCCAAAAAC 1526 Query 1293 GCAGGCACAAATGGCAATATCGTCATAGAAAAGGTCTTATCCAACAAAAACGCCATGTAC 1352 |||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||| Sbjct 1527 GCAGACACAAATGGCAATATCGTCATAGAAAAGGTCTTATCGAACAAAAACACCATGTAC 1586 Query 1353 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGCTGGCTGGTATAATCGATCCA 1412 ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| Sbjct 1587 GGTTACAATGCTGCAAAGAATCAATATGAAGATCTGATGTTGGCTGGTATAATTGATCCA 1646 Query 1413 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCAGTAGCTCAAACGTTTCTGACA 1472 ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| Sbjct 1647 ACCAAGGTTGTGAGATGTTGCTTGGAACACGCTTCATCAGTGGCTCAAACGTTTCTGACA 1706 Query 1473 TCGGACTGCGTTATAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1532 ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1707 TCGGATTGCGTTGTAGTTGAGATCAAAGAAATCAAACCAAGACCAATCATTAATCCACCA 1766 Query 1533 TTGCCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTGCCAAGATTT 1592 || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1767 TTACCTACTTCTTCTCCAGCTACCTCCTCCATGTTCCCTGACAGAAAATTACCAAGATTT 1826 Query 1593 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1640 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1827 CCTCAAATTATGCCAAGAACTCGAAGCCACTTTCCACGGAAGTAGGAA 1874 > AT1G55490.1 | Symbols: CPN60B, LEN1 | chaperonin 60 beta | chr1:20715563-20719165 REVERSE LENGTH=2087 Length=2087 Score = 178 bits (96), Expect = 2e-43 Identities = 311/413 (75%), Gaps = 22/413 (5%) Strand=Plus/Plus Query 1101 GTTGAAGATGCCCTGAATGCAACTAAGTCAGCAATTGAAGAAGGGATTGTAGTTGGTGGT 1160 ||||||||||| || |||||||| ||| | || | || ||||| ||||| ||||||||| Sbjct 1478 GTTGAAGATGCTCTTAATGCAACAAAGGCCGCTGTCGAGGAAGGTATTGTTGTTGGTGGT 1537 Query 1161 GGTTGCGCCCT-CTTGCAACTGGCTACAAAAGTGGACAG-AATTAAAGACACCCTTGACA 1218 |||||| | || ||| | || ||| | || || || | ||||||| ||| ||||| | Sbjct 1538 GGTTGCACTCTGCTT-CGTCTTGCTTCCAAGGTTGA-TGCCATTAAAGCCACGCTTGATA 1595 Query 1219 ACACA-GAACAGAAGATTGGAGCTGAAATA-TTCAAGAA-AGCATTGAGCTACCCCATAA 1275 | | ||| | ||| ||||||| || ||| || || || |||| | || |||||| ||| Sbjct 1596 A-TGATGAAGAAAAGGTTGGAGCGGATATAGTT-AA-AAGAGCACTAAGTTACCCCCTAA 1652 Query 1276 GACTTATAGCCAAAAACGCAGGCACAAATGGCAA-TATCGTCATAGAAAAGGT-CTTATC 1333 ||| || ||||| || || || ||||| || | | || | || ||||| ||| || Sbjct 1653 AACTAATCGCCAAGAATGCTGGTGTTAATGG-AAGTGTAGTTAGCGAGAAGGTGCTT-TC 1710 Query 1334 CAACAAAAACGCCATGTACGGTTACAATGCTGCAAAGAATCAA-TATGAAGATCTGAT-G 1391 |||| | |||| | | ||||||||||||||| || ||| || || ||| |||| | Sbjct 1711 CAACGATAACGTGAAATTCGGTTACAATGCTGC-AACCGGCAAGTACGAGGATTTGATGG 1769 Query 1392 CTGGCTGGTATAATCGATCCAACCAAGGTTGTGAGATGTTGCTTGGAACACGCTGCATCA 1451 || || || || ||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 1770 CT-GCAGGAATCATCGATCCAACAAAGGTTGTGAGATGTTGCTTGGAACACGCAGCTTCG 1828 Query 1452 GTAGCTCAA-ACGTTTCT-GACATCGGACTGCGTTATAGTTGAGATCAAAGAA 1502 || || || || ||||| || |||||||||||| | ||||||||||| ||| Sbjct 1829 GTTGCA-AAGAC-TTTCTTGATGTCGGACTGCGTTGTTGTTGAGATCAAGGAA 1879 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 82027690530 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5