BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921642
Length=922
Score E
Sequences producing significant alignments: (Bits) Value
AT1G26180.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 1386 0.0
> AT1G26180.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF2232, membrane (InterPro:IPR018710);
Has 285 Blast hits to 285 proteins in 90 species:
Archae - 0; Bacteria - 140; Metazoa - 0; Fungi - 0;
Plants - 40; Viruses - 0; Other Eukaryotes - 105 (source: NCBI
BLink). | chr1:9054744-9056852 FORWARD LENGTH=1276
Length=1276
Score = 1386 bits (750), Expect = 0.0
Identities = 865/919 (94%), Gaps = 14/919 (2%)
Strand=Plus/Plus
Query 3 TTCTTCTTCTTCGCCTCCATGAATCTCCTCAAAACGATTCATTACCAGTCCACCATTACT 62
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 63 TTCTTCTTCTTCGCCTCCATGAATCTCCTCAAGACGATTCATTACCAGTCTACCATTACT 122
Query 63 CAATTTTACCGTTTTGCCCCTACACGCTCCTTTGCTTCTTCTTTTTCTTCATCTGTTTCA 122
| |||||||||||||||||||||||||||||||| | ||| | ||||| |||
Sbjct 123 CGATTTTACCGTTTTGCCCCTACACGCTCCTTTG------C---TTC-T--TCTGTGTCA 170
Query 123 CTCTCTCCACAAAGACCCATAATCTCCCTCGTTTCTATCTCTAATCATCGAAGGTGC-TC 181
||||||||||| |||| ||||||||| ||||||||||||||||||| | |||||||| ||
Sbjct 171 CTCTCTCCACAGAGACACATAATCTCTCTCGTTTCTATCTCTAATCGTGGAAGGTGCTTC 230
Query 182 TGCATTCTCTAGCGTCTCTGGTGCTTCGATTTATGGTAATCAAGAGGATGGGAAGAAAGA 241
|||||||| |||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 231 -GCATTCTCGAGCGTCTCTGGTGCTTCGCTTTATAATAATCAAGAGGATGGGAAGAAAGA 289
Query 242 AGAATCTGAGAGAAATTATGCTTCGGCGGAGGAAGGAGATGAAGTGGTTTACCAGAAAAC 301
|||||| ||||||||||| |||||| || |||||||||||||||||||||||||||||||
Sbjct 290 AGAATCCGAGAGAAATTACGCTTCGACGAAGGAAGGAGATGAAGTGGTTTACCAGAAAAC 349
Query 302 GCTGAGATTAGTGGAGTGTGCCATGTTCGCTGCTGTAACTGGCCTCGTTTACTTTCTCAG 361
|||||||||||| || |||||||||||||||||||| || ||||||||||||||||||||
Sbjct 350 GCTGAGATTAGTAGAATGTGCCATGTTCGCTGCTGTGACAGGCCTCGTTTACTTTCTCAG 409
Query 362 CAATTCTCTCGCCATTGAGAACTACTTTGGGTGTTTCTTCTCACTACCAATTGTGATTTC 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 410 CAATTCTCTCGCCATTGAGAACTACTTTGGGTGTTTCTTCTCACTACCAATTGTGATTTC 469
Query 422 TTCCATAAGATGGAATATTGCTGGAGGCAGGAAGACAATGGTTGCTACTGTCATGCTCTT 481
||| ||||||||||| ||||| || |||||||||||||||||||||||||||||||| ||
Sbjct 470 TTCGATAAGATGGAACATTGCAGGTGGCAGGAAGACAATGGTTGCTACTGTCATGCTGTT 529
Query 482 GTTCATATTATCAGGTCCGGTCAAAGCATTAACTTACTTTCTTACTCATGGTCTTGTGGG 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 530 GTTCATATTATCAGGTCCGGTCAAGGCATTAACTTACTTTCTTACTCATGGTCTTGTGGG 589
Query 542 GCTTGCACTGGGATCATTGTGGAGGATGGGGGCAAGCTGGCGTCTCTCGATTTTCGTGTG 601
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 590 GCTTGCACTGGGATCATTGTGGAGTATGGGGGCAAGCTGGCGTCTCTCGATTTTCTTGTG 649
Query 602 CACAATGGTTCGAGCATTGGGTCTCATAGGCTATGTTCTGACATCATCCTTCTTAATAAG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CACAATGGTTCGAGCATTGGGTCTCATAGGCTATGTTCTGACATCATCCTTCTTAATAAG 709
Query 662 AGAAAACATTCTTGCTGTGATCACAATTAACATCCACGCCTCTCTCTCTTATGTTTTCAC 721
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 AGAAAATATTCTCGCTGTGATCACAATTAACATCCACGCTTCTCTCTCTTATGTTTTCAC 769
Query 722 GGCCATGGGCCTGAACATAATGCCTTCAATGAGCCTCATTTATATGATATTTGGGACAGT 781
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 770 GGCCATGGGCCTGAACATAATGCCTTCGATGAGCCTCATTTATATGATATTTGGGACAGT 829
Query 782 GCTGTTGCTAAACAGTGGATTCTTTGTGTTGTTGCTGCATCTGCTATACTCCATCTTCCT 841
|||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 830 GCTGTTACTTAACAGTGGATTCTTTGTGTTGTTGCTGCATCTGCTATACTCGATCTTCCT 889
Query 842 CACAAGACTCGGAATGAAATCTTCGTTGAGATTACCAGCTTGGTTGGACAAGGCTATATG 901
|||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 890 AACAAGACTAGGAATGAAATCTTCGTTGAGATTACCAGCCTGGTTGGACAAAGCTATATG 949
Query 902 ATGGGAATCAGGATCTCTG 920
|||||||||||||||||||
Sbjct 950 ATGGGAATCAGGATCTCTG 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45060029859
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5