BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921660
Length=1120
Score E
Sequences producing significant alignments: (Bits) Value
AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor... 1676 0.0
AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr... 316 2e-85
AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding fac... 237 2e-61
> AT1G25560.1 | Symbols: TEM1, EDF1 | AP2/B3 transcription factor
family protein | chr1:8981677-8983041 REVERSE LENGTH=1365
Length=1365
Score = 1676 bits (907), Expect = 0.0
Identities = 1058/1129 (94%), Gaps = 18/1129 (2%)
Strand=Plus/Plus
Query 3 TCTCTCTCAGAAACTCAAACAAAAATGGATTACAGCTGTGTAGATGACAGTAGTACAACG 62
||||||||| |||| | |||||| ||||| |||||||||||||| |||||||||||||||
Sbjct 43 TCTCTCTCACAAACAC-AACAAATATGGAATACAGCTGTGTAGACGACAGTAGTACAACG 101
Query 63 TCAGAATCTCTCTCCA--TCT-CTACTCCGAAGCCGACAACGACGAC-G-G-AGAAACTC 116
|||||||||||||||| ||| ||||||| ||||||||||||||||| | | ||||||||
Sbjct 102 TCAGAATCTCTCTCCATCTCTACTACTCCAAAGCCGACAACGACGACGGAGAAGAAACTC 161
Query 117 TCTTCTCCTCCGGC--C-ACGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGTAGCGTC 173
|||||||| ||||| | |||||||||||||||||||||||||||||||||| ||||||
Sbjct 162 TCTTCTCCGCCGGCGACGTCGATGCGTCTCTACAGAATGGGAAGCGGCGGAAGCAGCGTC 221
Query 174 GTTTTGGATTTAGATAACGGCGTCGAGACCGAGTCACGGAAGCTCCCGTCGTCGAAATAC 233
|||||||||| ||| ||||||||||||||||||||||| ||||| || |||||||||||
Sbjct 222 GTTTTGGATTCAGAGAACGGCGTCGAGACCGAGTCACGTAAGCTTCCTTCGTCGAAATAT 281
Query 234 AAAGGCGTTGTGCCTCAACCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 293
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 282 AAAGGCGTTGTGCCTCAGCCTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAG 341
Query 294 CGAGTTTGGCTCGGTACTTTCAACGAAGAAGAAGAAGCCGCGACTTCTTACGACATCGCC 353
|||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||
Sbjct 342 CGAGTTTGGCTCGGTACTTTCAACGAGGAAGAAGAAGCTGCGTCTTCTTACGACATCGCC 401
Query 354 GCT-AGGAGATTCCGTGGCCGTGACGCCGTCACTAATTTCAAATCTCAAGTTGATGGAAA 412
| | ||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 402 G-TGAGGAGATTCCGCGGCCGCGACGCCGTCACTAACTTCAAATCTCAAGTTGATGGAAA 460
Query 413 CGAAGCCGAAACGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTTGATATGTTGAG 472
||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 461 CGACGCCGAATCGGCTTTTCTTGACGCTCATTCTAAAGCTGAGATCGTGGATATGTTGAG 520
Query 473 GAAACACACTTACGCCGATGAGTTTGAGCAGAGCAAACGGAAATTTGTTAACGGTAACGG 532
||||||||||||||||||||||||||||||||| | |||||| ||||||||||| ||||
Sbjct 521 GAAACACACTTACGCCGATGAGTTTGAGCAGAGTAGACGGAAGTTTGTTAACGGCGACGG 580
Query 533 AAAACGCTGTGGATCGGAGACGGCGATGCACGGAAACGACGCAGTTTTGAGAGCGCGTGA 592
|||||||| ||| | ||||||||||| | ||||||||||||| |||||||||||||||||
Sbjct 581 AAAACGCTCTGGGTTGGAGACGGCGACGTACGGAAACGACGCTGTTTTGAGAGCGCGTGA 640
Query 593 GGTTTTGTTCGAGAAGACTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGAT 652
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 641 GGTTTTGTTCGAGAAGACTGTTACGCCGAGCGACGTCGGGAAGCTGAACCGTTTAGTGAT 700
Query 653 ACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGAT 712
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 701 ACCGAAACAACACGCGGAGAAGCATTTTCCGTTACCGGCGATGACGACGGCGATGGGGAT 760
Query 713 GAGTCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAGACAGAACAGGGAAAGTGTG 772
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 761 GAATCCGTCTCCGACGAAAGGCGTTTTGATTAACTTGGAAGATAGAACAGGGAAAGTGTG 820
Query 773 GCGGTTCCGTTACAGTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAG 832
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 821 GCGGTTCCGTTACAGTTACTGGAACAGCAGTCAAAGTTACGTGTTGACCAAGGGCTGGAG 880
Query 833 CCGGTTCGTTAAAGAGAAGAATC-TCAGAGCCGGTGATGTGGTTTATTTCGAGAGATCGA 891
||||||||||||||||||||||| || |||||||||||||||||| |||||||||||| |
Sbjct 881 CCGGTTCGTTAAAGAGAAGAATCTTC-GAGCCGGTGATGTGGTTTGTTTCGAGAGATCAA 939
Query 892 CCGAACCAGACCGGCAATTGTATATCGACTGGAAAGTCCGGTCTAGTCCGGTTCAGACTG 951
||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 940 CCGGACCAGACCGGCAATTGTATATCCACTGGAAAGTCCGGTCTAGTCCGGTTCAGACTG 999
Query 952 TGGTTAGGCTATTCGGAGTCAACATTTTCAATGTGAGTAACGAGAAACCAAACGACGTCG 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1000 TGGTTAGGCTATTCGGAGTCAACATTTTCAATGTGAGTAACGAGAAACCAAACGACGTCG 1059
Query 1012 CAGTAGAGTGCGGTGGCAAGA-GA--TCTCGGGAAGTTGATTTGTTTTCGTTAGGGTGTT 1068
|||||||||| | |||||||| || |||||||||| |||||||||||||||||||||||
Sbjct 1060 CAGTAGAGTGTGTTGGCAAGAAGAGATCTCGGGAAGATGATTTGTTTTCGTTAGGGTGTT 1119
Query 1069 CCAAGAAGCAGGCGATTATCAATGTCTTGTGACAAttttttcttttttt 1117
|||||||||||||||||||||| ||||||||||| || || |||||||
Sbjct 1120 CCAAGAAGCAGGCGATTATCAACATCTTGTGACAAATTCTT-TTTTTTT 1167
> AT1G13260.1 | Symbols: RAV1, EDF4 | related to ABI3/VP1 1 | chr1:4542168-4543742
FORWARD LENGTH=1575
Length=1575
Score = 316 bits (171), Expect = 2e-85
Identities = 590/779 (76%), Gaps = 81/779 (10%)
Strand=Plus/Plus
Query 144 TACAGAATGGGAAGCGGCGGAAGTAGCGTCGTTTTGGATTTAGATAACGGCGTCG-AGAC 202
||||| ||||||| ||||| ||||| || || |||| ||| |||||||| | || |
Sbjct 318 TACAGGATGGGAA---GCGGATCAAGCGTTGTGTTAGATTCAGAGAACGGCGTAGAAG-C 373
Query 203 CGAGTC-ACGGAAGCTCCCGTCGTCGAAATACAAAGGCGTTGTGCCTCAACCTAACGGAA 261
|| || | ||||||| |||||||| ||||||||||| || ||||| ||||| |||||||
Sbjct 374 TGAATCTA-GGAAGCTTCCGTCGTCAAAATACAAAGGTGTGGTGCCACAACCAAACGGAA 432
Query 262 GATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTTTCAACGAAG 321
||||||||||||||||||||||||| || ||||| || |||||||| || ||||||||||
Sbjct 433 GATGGGGAGCTCAGATTTACGAGAAACACCAGCGCGTGTGGCTCGGGACATTCAACGAAG 492
Query 322 AAGAAGAAGCCGCGACTT-CTTACGACATCGCCGCT-AGGAGATTCCGTGGCCGTGACGC 379
|||| |||||||| | | | |||||| |||| | | | || |||||| ||||||||||
Sbjct 493 AAGACGAAGCCGCT-CGTGCCTACGACGTCGCGGTTCAC-AGGTTCCGTCGCCGTGACGC 550
Query 380 CGTCACTAATTTCAAAT-C-TCAAGTTGATGGAAACGAAGCCGAAA-CGGCTTTTCTTGA 436
|||||| ||||||||| | | ||| ||||| ||||| ||| || ||| |||||
Sbjct 551 CGTCACAAATTTCAAAGACGTGAAG---ATGGA--CGAAGACGAGGTCGA-TTT-CTTGA 603
Query 437 CG-CTCATTCTAAAGCTGAGATCGTTGATATGTTGAGGAAACACACTTACGCCGATGAGT 495
||||||| ||| |||||||||||||||||||||||||||| ||||| ||| ||||
Sbjct 604 ATTCTCATTCGAAATCTGAGATCGTTGATATGTTGAGGAAACATACTTATAACGAAGAGT 663
Query 496 TTGAGCAGAGCAAACGGAAAT--T--TGTTAACGGTAACG-GAA-A--ACGCTGTGGA-- 545
| |||||||| |||||| | | || |||||| ||| || | ||| ||| |
Sbjct 664 TAGAGCAGAGTAAACGGCG-TCGTAATGGTAACGGAAACATGACTAGGACGTTGTTAACG 722
Query 546 TCGGAGACG-GCGATGCACGGAA-----ACGACGCAGTTTTGAGAGCG-CGTGAGGTTTT 598
|||| | | | ||| | || |||||| |||| ||| || || |||| |
Sbjct 723 TCGGGGTTGAGTAATG-ATGGTGTTTCTACGACGGGGTTT--AGATCGGCG-GAGGCACT 778
Query 599 GTTCGAGAA-GACTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGATACCGA 657
||| ||||| | | || ||||| || ||||| |||||||| |||||||| || |||||||
Sbjct 779 GTTTGAGAAAG-CGGTAACGCCAAGCGACGTTGGGAAGCTAAACCGTTTGGTTATACCGA 837
Query 658 AACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGATGAGTC 717
|||| ||||| ||||| ||||||||||||||| | | | | | | | |
Sbjct 838 AACATCACGCAGAGAAACATTTTCCGTTACCGTC-A--A-G-------T----A--A--C 878
Query 718 CGTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGACAG--AACAGGGAAAGTGTGGC 774
|| |||| |||||| || ||| || ||||| || ||| | ||| ||||||||||||
Sbjct 879 -GTTTCCGT-GAAAGGAGTGTTG-TTGAACTTTGAGGAC-GTTAAC-GGGAAAGTGTGGA 933
Query 775 GGTTCCGTTACA-GTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAGC 833
||||||||||| || | |||||||| ||||||||||| || ||||| || || ||||||
Sbjct 934 GGTTCCGTTACTCGT-ATTGGAACAGTAGTCAGAGTTATGTTTTGACTAAAGGTTGGAGC 992
Query 834 CGGTTCGTTAAAGAGAAGAATCT-CAGAGCCGGTGATGTGGTTTA-TTTCGAG-AGATC 889
|||||||||| ||||||||||| | | || ||||| |||||| | |||| || |||||
Sbjct 993 AGGTTCGTTAAGGAGAAGAATCTAC-GTGCTGGTGACGTGGTT-AGTTTC-AGTAGATC 1048
> AT3G25730.1 | Symbols: EDF3 | ethylene response DNA binding factor
3 | chr3:9396420-9397747 FORWARD LENGTH=1328
Length=1328
Score = 237 bits (128), Expect = 2e-61
Identities = 504/677 (74%), Gaps = 59/677 (9%)
Strand=Plus/Plus
Query 195 GTCG-AGACCGAGTCACGGAAGCTCCCGTCGTCGAA-ATACAAAGGCGTTGTGCCTCAAC 252
|||| || |||| ||| | ||||| || || || || || |||||| ||||| |||||||
Sbjct 233 GTCGAAG-CCGAATCAAGAAAGCTTCCTTCTTC-AAGATTCAAAGGTGTTGTTCCTCAAC 290
Query 253 CTAACGGAAGATGGGGAGCTCAGATTTACGAGAAGCATCAGCGAGTTTGGCTCGGTACTT 312
| || ||||||||||||||||||||||||||||| ||||| || || ||||| |||||||
Sbjct 291 CAAATGGAAGATGGGGAGCTCAGATTTACGAGAAACATCAACGCGTGTGGCTTGGTACTT 350
Query 313 TCAACGAAGAAGAAGAAGCCGCGACTT-CTTACGACATCGCCGCT-AGGAGATTCCGTGG 370
||||||| ||||| ||||| || | | |||||||| |||| ||| | | ||||||||
Sbjct 351 TCAACGAGGAAGACGAAGCAGCT-CGTGCTTACGACGTCGCGGCTCACC-GTTTCCGTGG 408
Query 371 CCGTGACGCCGTCACTAATTTCAAAT-CTCAA-GTT-GATGGAAACGAAGCCGAAACGGC 427
||| || ||||| |||||||||||| | | | ||| || | || || | || |
Sbjct 409 CCGCGATGCCGTTACTAATTTCAAAGACACGACGTTCGAAG-AA--GAGGTTGA---G-- 460
Query 428 TTTTCTTGA-CGCTCATTCTAAAGCTGAGATCGTTGATATGTTGAGGAAACACACTTACG 486
|| ||| | ||| ||||| ||| | |||||||| ||||||||||| ||||||||||||
Sbjct 461 TT--CTTAAACGCGCATTCGAAATCAGAGATCGTAGATATGTTGAGAAAACACACTTACA 518
Query 487 CCGATGAGTTTGAGCAGAGCAAACGGAAATTTGTTAACGGTAACGGAAAA----CG-CTG 541
|| ||||| || || || ||||| || || | ||||||||||||| || | |
Sbjct 519 AAGAAGAGTTAGACCAAAGGAAACGTAACCGTG--A-CGGTAACGGAAAAGAGACGACGG 575
Query 542 TGGAT-CGGAGACGGCGATGCACGGAAACGACGCAGTTTTGAGAGCG-CGTGAGGTTT-T 598
| | | | | ||||| || | |||| |||| | | || || ||| || |
Sbjct 576 CGTTTGCTTTGGCTTCGATGGT-GGTTATGACGGGGTTTAAA-A-CGGCG-GAG-TTACT 630
Query 599 GTTCGAGAAGACTGTGACGCCGAGTGACGTCGGGAAGCTGAACCGTTTAGTGATACCGAA 658
||| ||||| || || ||||| |||||||||||||| || ||||||||||| ||||| ||
Sbjct 631 GTTTGAGAAAACGGTAACGCCAAGTGACGTCGGGAAACTAAACCGTTTAGTTATACCAAA 690
Query 659 ACAACACGCGGAGAAGCATTTTCCGTTACCGGCGACGACGACGGCGATGGGGATGAGTCC 718
||| || |||||||| ||||||||||||||| | | | || || | |
Sbjct 691 ACACCAAGCGGAGAAACATTTTCCGTTACCGTT-AGGT--A-----ATA---ATAA--C- 736
Query 719 GTCTCCGACGAAAGGCGTTTTGATT-AACTTGGAAGACAG--AACAGGGAAAGTGTGGCG 775
||||||| ||||| | || || || || |||||| | ||| |||||||||||| |
Sbjct 737 GTCTCCGTT-AAAGGTATGCTG-TTGAATTTCGAAGAC-GTTAAC-GGGAAAGTGTGGAG 792
Query 776 GTTCCGTTACAGTTACTGGAACAGCAGTCAGAGTTACGTGTTGACCAAGGGCTGGAGCCG 835
|||||||||| ||| ||||| || ||||| ||||| ||||||||||| || ||||| |
Sbjct 793 GTTCCGTTACTCTTATTGGAATAGTAGTCAAAGTTATGTGTTGACCAAAGGTTGGAGTAG 852
Query 836 GTTCGTTAAAGAGAAGA 852
||||||||||||||||
Sbjct 853 ATTCGTTAAAGAGAAGA 869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54919396230
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5