BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921765 Length=412 Score E Sequences producing significant alignments: (Bits) Value AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A | ch... 669 0.0 AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | ch... 272 2e-72 > AT1G27310.1 | Symbols: NTF2A | nuclear transport factor 2A | chr1:9484316-9485896 REVERSE LENGTH=774 Length=774 Score = 669 bits (362), Expect = 0.0 Identities = 379/387 (98%), Gaps = 2/387 (1%) Strand=Plus/Plus Query 11 ACGAAAG-AAGAGATGGATCCAGACGCAGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 69 ||| ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 95 ACG-AAGAAAGAGATGGATCCAGACGCTGTTGCAAAGGCTTTCGTTGAGCACTACTACTC 153 Query 70 CACCTTCGATGCAAATCGTCCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGAC 129 |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 154 CACCTTCGATGCAAATCGTCCAGGGTTGGTTTCTCTATACCAAGAAGGATCCATGTTGAC 213 Query 130 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCAGCCTCCC 189 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 214 CTTCGAAGGCCAGAAGATCCAGGGCTCTCAGAACATCGTCGCTAAGCTCACCGGCCTCCC 273 Query 190 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 249 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 274 TTTCCAGCAGTGTAAGCACAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGG 333 Query 250 CGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 309 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 334 TGGTATGCTCGTCTTTGTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAA 393 Query 310 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGATAT 369 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 394 GTTCAGCCAGATGTTCCATTTGATATCGAATCAGGGAAACTACTACGTGTTCAATGACAT 453 Query 370 ATTCAGGTTGAACTATGCCTGAGGAAT 396 ||||||||||||||||||||||||||| Sbjct 454 ATTCAGGTTGAACTATGCCTGAGGAAT 480 > AT1G27970.2 | Symbols: NTF2B | nuclear transport factor 2B | chr1:9746811-9748467 FORWARD LENGTH=676 Length=676 Score = 272 bits (147), Expect = 2e-72 Identities = 298/369 (81%), Gaps = 18/369 (5%) Strand=Plus/Plus Query 21 AGATGGATCCAGACGCAGT-TGCAAAGGCTTTCGTTGAGCACTACTACTCCACCTTCGAT 79 |||||||||| ||||| || | | ||||| ||||| || || ||||| ||||||||||| Sbjct 118 AGATGGATCCCGACGCTGTAT-CTAAGGCCTTCGTCGAACATTACTATTCCACCTTCGAC 176 Query 80 GCAAATCGT-CCAGGTTTGGTTTCTCTGTACCAAGAAGGATCCATGTTGACCTTCGAAGG 138 | || ||| | ||| | | | ||| || || |||| || ||| | ||||||||||| Sbjct 177 ACCAACCGTGTC-GGTCTCGCTGGTCTCTATCAGGAAGCTTCTATGCTCACCTTCGAAGG 235 Query 139 CCAGAAGATCC-AGG-GCTCTCAGAACATCGTCGCTAAGCTCACCAGC-CTCCCTTTCCA 195 || ||||||| ||| | || |||| ||||||||||||||||||| | || |||||||| Sbjct 236 TCAAAAGATCCAAGGAG-TC-CAGAGCATCGTCGCTAAGCTCACC-TCTCTTCCTTTCCA 292 Query 196 GCAGTGTAAGCA-CAACATCACCACCGTCGATTGTCAGCCTTCTGGTCCCGCCGGCGGTA 254 |||||| ||||| | ||||| ||||||| |||||||||||||||||||| || ||||| Sbjct 293 GCAGTGCAAGCATC-ACATCTCCACCGTTGATTGTCAGCCTTCTGGTCCTGCTTCCGGTA 351 Query 255 TGCTCGTCTTT-GTCTCCGGCAATCTTCAGCTCGCTGGTGAACAACACGCTCTCAAGTTC 313 ||||||| ||| |||||||| ||||| |||||||| || ||| ||||||||||||||||| Sbjct 352 TGCTCGT-TTTCGTCTCCGGTAATCTCCAGCTCGCCGGAGAAGAACACGCTCTCAAGTTC 410 Query 314 AGCCAGATGTTCCATTTGATATCGAATC-AG--GGAAACTACTACGTGTTCAATGATATA 370 ||||||||||| |||||||| ||| | | |||| || ||||||||||| |||||| Sbjct 411 AGCCAGATGTTTCATTTGATGCCGACGCCACAAGGAAGCTTTTACGTGTTCAACGATATA 470 Query 371 TTCAGGTTG 379 ||||| ||| Sbjct 471 TTCAG-TTG 478 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19503886612 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5