BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921768
Length=1433
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27340.1 | Symbols: | Galactose oxidase/kelch repeat superf... 2326 0.0
> AT1G27340.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:9495520-9498085 FORWARD LENGTH=1853
Length=1853
Score = 2326 bits (1259), Expect = 0.0
Identities = 1383/1441 (96%), Gaps = 16/1441 (1%)
Strand=Plus/Plus
Query 3 CTCTCCTCTTGTTTGGGGCATGGAAGAAGAGCTTGCCATGCTTAGACAGCTCATCGGTCA 62
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 CTCT-CT-TTGTTTGGGGCATGGAAGAAGAGCTTGCCATGCTTAGACAGCTCATCGGTCA 262
Query 63 GCTTCAAGAGCTCTTGCACAACGG--CT-CTCCTCCT-C-T-TACTTCTTC-T-TC--T- 111
|||||||||||||||||||||||| || |||||||| | | | ||||||| | || |
Sbjct 263 GCTTCAAGAGCTCTTGCACAACGGCTCTCCTCCTCCTCCTTCTTCTTCTTCATCTCTGTC 322
Query 112 -TATTCTTCTCCGTCGTTTTTAGTTCTCAACCATCCTCAGTATCAGAACGGATGGTGTTT 170
| |||||||||||| ||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 323 GTCTTCTTCTCCGTCATTTTTGGTTCTCCACCATCCTCAGTATCAGAACGGATGGTGTTT 382
Query 171 GCCCTGTATTGAGGAAACTTCTGCTGATGATTGTTGTGATATTGTAATGGCTGCTGGAAA 230
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 383 GCCCTGTATTGAGGATACTTCTGCTGATGATTGTTGTGATATTGTAATGGCTGGTGGAAA 442
Query 231 GAGGCCTGGGATCTTCAAGATGTTAGAAACTGTCAAGCCTCCCGTCAAGCGAACTCGAAA 290
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 443 GAGGCCTGGGATCTTCAAGATGTTAGAAACTGTCAAGCCTCCCGTCAAACGAACTCGAAA 502
Query 291 AGACCGGAATCAAGGGAAATTATGTACAGAAGGAGATGACATAAGTGGAAACATGGATCA 350
||| |||| ||||||||||| |||||| |||| |||||| |||||||| |||||||||||
Sbjct 503 AGAACGGACTCAAGGGAAATCATGTACGGAAGTAGATGAGATAAGTGGGAACATGGATCA 562
Query 351 AGAAATCTGGCAGGAATTTCCTCAAGATCTCTTTGAAG-CTGTTGTTTCCAGGCTACCAA 409
|||||| ||||||||||| ||||||||||||||||||| | ||||||||||| |||||||
Sbjct 563 AGAAATATGGCAGGAATTCCCTCAAGATCTCTTTGAAGAC-GTTGTTTCCAGACTACCAA 621
Query 410 TTGCTACATTTTTCCAGTTCCGTGCAGTTTGCCGTAAATGGAATGCTCTTATTGAGTCAG 469
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 622 TGGCTACTTTTTTCCAGTTCCGTGCAGTTTGCCGTAAATGGAATGCTCTTATTGATTCAG 681
Query 470 ATAGCTTCTCCAGATGCTTCACTGAGCTTCCTCAGACCATCCCATGGTTCTATACCATAA 529
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 682 ATAGCTTCTCCAGATGCTTCACTGAGCTTCCTCAGACCATCCCATGGTTCTACACCATAA 741
Query 530 CCCACGAGAATGTCAACTCGGGACAAGTGTACGACCCTTCTTTGAAGAAATGGCACCATC 589
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 742 CCCACGAGAATGTCAACTCAGGACAAGTGTACGACCCTTCTTTGAAGAAATGGCACCATC 801
Query 590 CAATTATCCCAGCACTACCCAAGAAGAGTATTGTTTTGCCAATGGCTTCTGCAGGAGGTC 649
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 802 CGATTATCCCAGCACTACCCAAGAAGAGTATTGTTTTGCCAATGGCTTCTGCAGGAGGTC 861
Query 650 TAGTGTGCTTCCTCGACATTGGTCATAGGAACTTCTATGTGAGCAACCCGCTGACCAAGT 709
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 862 TAGTGTGCTTCCTCGACATTGGTCATAGGAACTTCTACGTGAGCAACCCGCTTACCAAGT 921
Query 710 CTTTCAGAGAGTTGCCTGCTAGGTCGTTCAAGGTTTGGTCTCGTGTTGCAGTAGGAATGA 769
||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 922 CTTTCAGGGAGTTGCCTGCTAGGTCGTTCAAGGTCTGGTCTCGTGTTGCGGTAGGAATGA 981
Query 770 CTCTGAATGGAAACTCCACCAGTCATGGGTATAAGGTCTTGTGGGTTGGATGTGAAGGAG 829
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 982 CTCTGAATGGAAACTCCACCAGTCATGGGTATAAGGTCTTGTGGGTTGGATGTGAAGGAG 1041
Query 830 AGTACGAAGTGTATGATTCCCTGAGTAATGTGTGGACCAAACGAGGGACCATCCCGTCCA 889
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1042 AGTACGAAGTCTATGATTCCCTGAGTAATGTGTGGACCAAACGAGGGACCATCCCGTCCA 1101
Query 890 ACATAAAGCTCCCGGTGTTGCTCAACTTTAAGTCACAGCCAGTGGCTATCCACAGCACAC 949
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1102 ACATAAAGCTCCCGGTGTTGCTCAACTTTAAGTCACAGCCAGTGGCTATCCACAGCACAC 1161
Query 950 TTTACTTCATGTTAACAGATCCCGAAGGGATATTGTCCTATGACATGGTCTCTGGGAAGT 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1162 TTTACTTCATGTTAACAGATCCCGAAGGGATATTGTCCTATGACATGGTCTCTGGGAAAT 1221
Query 1010 GGAAGCAGTTCATCATACCGGGCCCACCAGACCTGAGCGATCACACGCTGGCTGTGTGCG 1069
|||| |||||||| ||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 1222 GGAAACAGTTCATTATACCTGGCCCACCAGACCTGAGCGATCACACGCTGGCTGCGTGCG 1281
Query 1070 GAGAGCGATTGATGCTGGTGGGTCTTCTGACTAAAAACGCTGCCACTTGCGTTTGCATAT 1129
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1282 GAGAGCGGTTGATGCTGGTGGGTCTACTGACTAAAAACGCTGCCACTTGCGTTTGCATAT 1341
Query 1130 GGGAGCTGCAGAAGATGACACTGTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1342 GGGAGCTGCAGAAGATGACACTGTTGTGGAAGGAGGTTGACAGAATGCCAAACATATGGT 1401
Query 1190 GCTTGGAGTTTTACGGAAAGCACATTAGGATGAATTGTCTGGGCAACAAAGGTTGTCTGA 1249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1402 GCTTGGAGTTTTACGGAAAGCACATTAGGATGAATTGTCTGGGCAACAAAGGTTGTCTGA 1461
Query 1250 TATTATTGTCCTTGAGGTCCAGACAGATGAACCGTCTGATAACCTACAATGCTGTTACAA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1462 TATTATTGTCCTTGAGGTCCAGACAGATGAACCGTCTGATAACCTACAATGCTGTGACTA 1521
Query 1310 GGGAATGGGCCAAGGTCCCTGGCTGCACCGTTCCTCGTGGGAGAAAAAGACTTTGGATCG 1369
|||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1522 GGGAATGGACCAAGGTCCCTGGCTGCACCGTTCCTCGTGGGAGGAAAAGACTTTGGATCG 1581
Query 1370 CTTGCGGAACAGCGTTTCATCCCTCCCCTACAGCTAGGGCTTGATCATCTTTTCTCTTGG 1429
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1582 CTTGCGGAACAGCGTTTCATCCCTCCCCTACAGCTAGGGCTTGATCATCTTTTCTCCTGG 1641
Query 1430 T 1430
|
Sbjct 1642 T 1642
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70632166815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5