BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg921786
Length=1339
Score E
Sequences producing significant alignments: (Bits) Value
AT1G27480.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 2030 0.0
> AT1G27480.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:9544514-9546285 FORWARD LENGTH=1509
Length=1509
Score = 2030 bits (1099), Expect = 0.0
Identities = 1261/1340 (94%), Gaps = 8/1340 (1%)
Strand=Plus/Plus
Query 2 TCTGTTTCTTAGAAAGAAAATGAACGAACCATCTTCACGA-TATTTGGTAGTCACAGGGA 60
|||||||||||||| ||||||||| || |||||||| | |||| |||||||| || ||
Sbjct 75 TCTGTTTCTTAGAACGAAAATGAAAAAAATATCTTCAC-ATTATTCGGTAGTCATAGCGA 133
Query 61 TGCTCGTAATGGCGACAATGATCTCCATGTGTCAAGCTATGGGTAATAACGTCTACCCTC 120
| ||||| ||| ||| |||| ||| |||||||||||| |||||| ||||| ||||||
Sbjct 134 TACTCGTTGTGGTGACGATGACCTCGATGTGTCAAGCTGTGGGTAGCAACGTGTACCCTT 193
Query 121 TGATTCTGGTTCCAGGAAACGGAGGTAACCAGCTAGAGGCAAGACTGGACAGAGAATACA 180
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct 194 TGATTCTGGTTCCAGGAAACGGAGGTAACCAGCTAGAGGTACGGCTGGACAGAGAATACA 253
Query 181 AGCCAAGTAGCGTTTGGTGTAGCAGCTGGTTATATCCGATCCATAAGAAGAGTGGTGGAT 240
|||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 254 AGCCAAGTAGTGTCTGGTGTAGCAGCTGGTTATATCCGATTCATAAGAAGAGTGGTGGAT 313
Query 241 GGTTTAGGCTATGGTTCGATGCGGCAGTGTTATTGTCTCCCTTCACCAGGTGCTTCAACG 300
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct 314 GGTTTAGGCTATGGTTCGATGCAGCAGTGTTATTGTCTCCCTTCACCAGGTGCTTCAGCG 373
Query 301 ATCGAATGATGTTGTACTATGATGCC-GATTTGGATGATTACCAAAATGCCCCTGGTGTC 359
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 374 ATCGAATGATGTTGTACTATGA-CCCTGATTTGGATGATTACCAAAATGCTCCTGGTGTC 432
Query 360 CAGACCCGGGTTCCTCATTTCGGTTCGACCAAATCCCTTCTCTACCTTGACCCTCGTCTC 419
|| |||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||
Sbjct 433 CAAACCCGGGTTCCTCATTTCGGTTCGACCAAATCACTTCTATACCTCGACCCTCGTCTC 492
Query 420 CGAGATGCCACATCTTACATGGAACATTTGGTGAAAGCTCTAGAGAAAGACTGCGGGTAT 479
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 493 CGAGATGCCACATCTTACATGGAACATTTGGTGAAAGCTCTAGAGAAAAAATGCGGGTAT 552
Query 480 GTTAACGACCAAACCATCCTTGGAGCTCCATATGATTTCAGGTACGGCCTGGCAGCCTCG 539
|||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||
Sbjct 553 GTTAACGACCAAACCATCCTAGGAGCTCCATATGATTTCAGGTACGGCCTGGCTGCTTCG 612
Query 540 GGCCACCCGTCCCGTGTAGCCTCACAGTTCCTACAAGACCTCAAACAATTGGTGGAAAAA 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 613 GGCCACCCGTCCCGTGTAGCCTCACAGTTCCTACAAGACCTCAAACAATTGGTGGAAAAA 672
Query 600 ACTAGCAGCGAGAACGAAGGAAAACCAGTGATACTCCTCTCCCATAGCCTAGGAGGACTT 659
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 673 ACTAGCAGCGAGAACGAAGGAAAGCCAGTGATACTCCTCTCCCATAGCCTAGGAGGACTT 732
Query 660 TTCGTCCTCCATTTCCTTAACCGTACCACCCCTTCATGGCGCCGCAAGTACATCAAACAC 719
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 TTCGTCCTCCATTTCCTCAACCGTACCACCCCTTCATGGCGCCGCAAGTACATCAAACAC 792
Query 720 TTTGTTGCACTCGCTGCACCATGGGGTGGGACGATCTCTCAGATGAAGACATTTGCTTCT 779
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TTTGTTGCACTCGCTGCGCCATGGGGTGGGACGATCTCTCAGATGAAGACATTTGCTTCT 852
Query 780 GGAAACACACTTGGTGTCCCTTTAGTTAACCCTTTGCTGGTCAGACCGCAGCAGAGGACC 839
|| |||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 853 GGCAACACACTCGGTGTCCCTTTAGTTAACCCTTTGCTGGTCAGACGGCATCAGAGGACC 912
Query 840 TCCGAGAGTAATCAATGGCTACTTCCATCTACCAAAGTGTTTCACGACAGAACTAAACCT 899
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TCCGAGAGTAACCAATGGCTACTTCCATCTACCAAAGTGTTTCACGACAGAACTAAACCG 972
Query 900 CTTGTCATAACTCCC-AGGCTTAAGTACACAGCTTACGAGATGGATCAGTTTCTTGCAGA 958
|||||| |||||||| ||| |||| |||||||||||||||||||||| |||| |||||||
Sbjct 973 CTTGTCGTAACTCCCCAGG-TTAACTACACAGCTTACGAGATGGATCGGTTTTTTGCAGA 1031
Query 959 CATTGGGTTCTCTCAAGGAGTTGTGCCTTACAAGACAAGAGTGTTGCCTTTAACAGAGGA 1018
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1032 CATTGGATTCTCACAAGGAGTTGTGCCTTACAAGACAAGAGTGTTGCCTTTAACAGAGGA 1091
Query 1019 ACTGGTGACTCCGGGAGTGCCAATCACTTGCATATATGGGAGAGGAGTTGATACACCGGA 1078
||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1092 GCTGATGACTCCGGGAGTGCCAGTCACTTGCATATATGGGAGAGGAGTTGATACACCGGA 1151
Query 1079 GGTTTTGGTGTATGGAAAAGGAGGATTCGATGAA-CAACCAGAGATTAAGTATGGAGATG 1137
||||||| ||||||||||||||||||||||| || |||||||||||||||||||||||||
Sbjct 1152 GGTTTTGATGTATGGAAAAGGAGGATTCGAT-AAGCAACCAGAGATTAAGTATGGAGATG 1210
Query 1138 GAGATGGGACGGTTAATTTGGCGAGCTTAGCAGCTTTGAAAGTCGATAGATTGAAAACCG 1197
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1211 GAGATGGGACGGTTAATTTGGCGAGCTTAGCAGCTTTGAAAGTCGATAGCTTGAACACCG 1270
Query 1198 TAGAGATTGGTGGAGTCTCGCATACATCTATACTTGAAGACGAGATCGCACTTAAAGAGA 1257
||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1271 TAGAGATTGATGGAGTTTCGCATACATCTATACTTAAAGACGAGATCGCACTTAAAGAGA 1330
Query 1258 TTATGAAGCAGATTTCGATTATTAATTCTGAATTAACCAACGTTAATGTCATGAATGAAT 1317
|||||||||||||||| |||||||||| ||||||| |||| ||||||| | | |||||||
Sbjct 1331 TTATGAAGCAGATTTCAATTATTAATTATGAATTAGCCAATGTTAATGCCGTCAATGAAT 1390
Query 1318 GAGAGAAGTCAACTATTTCA 1337
||||| ||||||||||||||
Sbjct 1391 GAGAGCAGTCAACTATTTCA 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65913315585
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5