BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg921869 Length=824 Score E Sequences producing significant alignments: (Bits) Value AT1G28200.1 | Symbols: FIP1 | FH interacting protein 1 | chr1:9... 1218 0.0 > AT1G28200.1 | Symbols: FIP1 | FH interacting protein 1 | chr1:9850147-9852366 REVERSE LENGTH=1094 Length=1094 Score = 1218 bits (659), Expect = 0.0 Identities = 759/807 (94%), Gaps = 7/807 (1%) Strand=Plus/Plus Query 17 AAATCATGAGTGGGCAAGAGAATCATGA-CGATGGTCGGATCTCTTCTTCTACTCCCGCC 75 |||||||||||||||||||||||||||| | |||| |||| || |||||||| |||||| Sbjct 62 AAATCATGAGTGGGCAAGAGAATCATGATC-ATGGCCGGA--TC-TCTTCTACGCCCGCC 117 Query 76 GCCGCGTCGGAGCCTTCAAAGGCACCTTCTCACTCCTCTGACTACGCTCCTTACCCTAAG 135 ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 118 GCCGCGTCGGAGCCTTCCAAGGCTGCTGCTCACTCCTCTGACTACGCTCCTTACCCTAAG 177 Query 136 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 195 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 178 CTCGATCCTACCGACGTCACTCCTCCTCCTCCTCAGCCTATTCCCACCGGTGCCGCCGCA 237 Query 196 ACCACCATGCC-GTCGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 254 ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 ACCACCATGCCAG-CGGAATCCAATCCTTACGTTTCTCCTTCCCCTGCCCCAAGGAATAC 296 Query 255 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCAGCCGATGCCACCAA 314 ||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 297 GATGGATTCGGTGAAGGATACGTTAGGGAAATGGGGGAAAATGGCTGCCGACGCCACCAA 356 Query 315 GAAGGCAGAGGATCTCGCCGGAAACGTTTGGCAACACTTGAAAACAGGCCCTAGTGTAGC 374 |||||| ||||||||||||||||| ||||||| ||||||||||||||||| |||||||| Sbjct 357 GAAGGCGGAGGATCTCGCCGGAAATTTTTGGCAGCACTTGAAAACAGGCCCAAGTGTAGC 416 Query 375 CGATGCTGCTGTCTCACGAATTGCTCAGGGGACAAAAATACTTGCGGAAGGTGGATATGA 434 ||||||||||| |||||||||||||||||||||||||||||||| || |||||||| || Sbjct 417 AGATGCTGCTGTTTCACGAATTGCTCAGGGGACAAAAATACTTGCAGAGGGTGGATACGA 476 Query 435 AAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAGAAACTTCTCAAGACCTATGC 494 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 477 GAAGGTCTTCAAGCAAACATTTGATTGCCTTCCTGATGAAAAACTTCTCAAGACCTATGC 536 Query 495 TTGCTACTTGTCTACATCTGCTGGTCCTGTGATGGGAGTTATGTATCTTTCGACTCACAA 554 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 537 TTGCTACTTGTCTACATCTGCTGGTCCTGTCCTGGGAGTTATGTATCTTTCGACTCACAA 596 Query 555 GCTTGCCTTCTGTAGTGATACTCCTCTCTCTTACAAAGAGGGTGAGCAGACTCAGTGGAG 614 |||||| |||| |||||| | |||||||||||||||||||||||||||||| | |||||| Sbjct 597 GCTTGCGTTCTCTAGTGACAATCCTCTCTCTTACAAAGAGGGTGAGCAGACCCTGTGGAG 656 Query 615 CTATTACAAGGTGGTACTTCCAGTGAACCAGCTGAAGGCAGTGAATCCATCAACAAGCAG 674 ||||||||||||||||||||| | ||| ||||||||||||||||| ||||||||||| || Sbjct 657 CTATTACAAGGTGGTACTTCCGGCGAATCAGCTGAAGGCAGTGAACCCATCAACAAGTAG 716 Query 675 AGTGAACACATCAGAGAAATACATACAAGTGATTTCCATTGACAACCACGAGTTCTGGTT 734 |||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| Sbjct 717 AGTGAACACATCTGATAAATACATACAAGTGATTTCCATCGACAACCACGAGTTCTGGTT 776 Query 735 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCTGTGCAGTCACA 794 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 777 TATGGGGTTTGTGACTTATGAAAGCGCTGTGAAGAGCCTTCAAGAAGCGGTGCAGTCACA 836 Query 795 TGGTCCATGAGGGTTCACTAGTATAAA 821 |||||| ||| ||| |||| ||||||| Sbjct 837 TGGTCCGTGAAGGTCCACTGGTATAAA 863 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40137083453 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5