BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922071
Length=869
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30190.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1016 0.0
> AT1G30190.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT2G34610.1);
Has 56 Blast hits to 56 proteins in 13 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 44; Viruses
- 0; Other Eukaryotes - 12 (source: NCBI BLink). | chr1:10618966-10619802
FORWARD LENGTH=837
Length=837
Score = 1016 bits (550), Expect = 0.0
Identities = 759/853 (89%), Gaps = 41/853 (5%)
Strand=Plus/Plus
Query 22 ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTCGAGCCTTACAAGCCAAAG 81
|||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 1 ATGACAGAAATGCCCTCGTACATGATCGAGAACCCAAAGTTC--G-------AGCCAAAG 51
Query 82 AAACGACGTTATTACACTTCTTCGATGCTTACCATCTTCTTATCGATCTTCACATACATT 141
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 52 AAACGACGTTATTACTCTTCTTCGATGCTTACCATCTTCTTACCGATCTTCACATACATT 111
Query 142 ATGATCTTTTACGTTTTCGAAGTATCACCATCTTCGGTCTTCAAAGACACAAAGGTCTTG 201
||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 112 ATGATCTTTCACGTTTTCGAAGTATCACTATCTTCGGTCTTTAAAGACACAAAGGTCTTG 171
Query 202 TTCTTCATCTCCAATACTCTCATCCTCATAATCGCCGCCGATTATGGTGCCTTCTCTGAT 261
|||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 172 TTCTTCATCTCCAATACTCTCATCCTCATAATAGCCGCCGATTATGGTTCCTTCTCTGAT 231
Query 262 AAAGAGAGTCACGACTTTTACAGTGAATACAAAGCCGCCA-CCGCAACGATGAGAAGCCG 320
||||||||||| ||||||||| ||||||||| | || || | ||||||||| ||| |||
Sbjct 232 AAAGAGAGTCAAGACTTTTACGGTGAATACACTGTCG-CAGCGGCAACGATGCGAAACCG 290
Query 321 TGCTGATTACTACTCTCCGATTCCCGTTTCaagacaga--gagaaaac-cttagagatgc 377
|||||| |||||||||||||||||| || |||| | |||||||| | || |||||
Sbjct 291 AGCTGATAACTACTCTCCGATTCCCG--TCTTGACATACCGAGAAAACAC-TAAAGATGG 347
Query 378 aaaaatcaagaaccct-aa-a----g-a---a-gaa----gaagaag--GA-GTACCGAT 419
| |||||||||||||| || | | | | ||| ||||||| || | ||||||
Sbjct 348 AGAAATCAAGAACCCTAAAGATGTCGAATTCAGGAACCCTGAAGAAGAAGACGAACCGAT 407
Query 420 GGTGAAAGAGATCGTTTACGTTTATCCTCCCGAGAAAATAGTGAC-AGTGGTGAACGAGG 478
||||||||| ||| ||| ||||| |||||||||||||||||| || |||||||| |||
Sbjct 408 GGTGAAAGATATCATTTGCGTTTCTCCTCCCGAGAAAATAGT-ACGAGTGGTGAGTGAGA 466
Query 479 AGAAACCGAGAGACGTTTTAGCTATCG-AGAATTTCAAA-CAGGTTACAGATCAAACTGT 536
|||||| |||||| | | ||||||| | |||| | |||| || |||||||| |||||| |
Sbjct 467 AGAAACAGAGAGATGATGTAGCTATGGAAGAA-TACAAACCA-GTTACAGAACAAACTCT 524
Query 537 TGCTAGCGAAGAAGCTTGTGACGCAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 596
|||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 525 TGCTAGCGAAGAAGCTTGCAACACAAGAAACCATGTGAACCCTAATAAACCGTACGGGCG 584
Query 597 AAGTAGATCAGATAAGCCACGGAGAAAGAGGCTCAGCGAAGGTACAGAGACGACCAAACG 656
||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 585 AAGTAAATCAGATAAGCCACGGAGAAAGAGGCTCAGCGTAGATACAGAGACGACCAAACG 644
Query 657 TAAAAGTTATGGTCGAAGGAAATCAGATTGCTCGACAAGGATGGTTATTCCGGAGAAGTG 716
||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||
Sbjct 645 TAAAAGTTATGGTCGAAAGAAATCAGATTGCTCGAGATGGATGGTTATTCCGGAGAAGTG 704
Query 717 GGAAAATGTTAAAGAAGAATCTGAAGAGTTTTCAAAATTGTCCAACGAGGAGTTAAACAA 776
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 705 GGAATATGTTAAAGAAGAATCTGAAGAGTTTTCAAAGTTGTCCAACGAGGAGTTGAACAA 764
Query 777 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCATCACGAGT 836
|||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 765 ACGAGTCGAAGAATTCATCCAACGGTTCAATAGACAGATCAGATCACAATCACCGCGAGT 824
Query 837 TTCGTCTACTTGA 849
|||||||||||||
Sbjct 825 TTCGTCTACTTGA 837
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42397620068
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5