BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922093

Length=439
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G30380.1 | Symbols: PSAK | photosystem I subunit K | chr1:10...   686    0.0  


> AT1G30380.1 | Symbols: PSAK | photosystem I subunit K | chr1:10722197-10723247 
FORWARD LENGTH=755
Length=755

 Score =  686 bits (371),  Expect = 0.0
 Identities = 417/439 (95%), Gaps = 3/439 (1%)
 Strand=Plus/Plus

Query  1    TTTGTAGATTCAGCTAAGAAAATGGCGAGCACTGTGATGACTACATTGCCTCAGTTCAAT  60
            |||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||
Sbjct  108  TTTGTAGAATCAACTAAGAAAATGGCTAGCACTATGATGACTACATTGCCTCAGTTCAAT  167

Query  61   GGTCTTCGAGCCACCAAGATCTCTGCAGCTCCTGTTCAAGGCCTGGCAAGTGTTCAGCCC  120
            ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct  168  GGTCTTCGAGCCACCAAAATCTCTGCAGCTCCTGTACAAGGCCTGGCAAGTGTTCAGCCC  227

Query  121  ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAAGTGTGGTGACTTCATTGGTTCATCA  180
            |||||||||||||||||||||||||||||||||||  || |||||||||| |||||||||
Sbjct  228  ATGAGACGCAAGGGAAATGGAGCTTTGGGTGCAAA--GT-GTGACTTCATCGGTTCATCA  284

Query  181  ACAAATCTGATAATGGTAACATCTACGACGCTGATGTTGTTTGCGGGGAGATTCGGACTT  240
            |||||||||||||||||||| || ||||| ||||||||||| ||||||||||||||||||
Sbjct  285  ACAAATCTGATAATGGTAACGTCGACGACCCTGATGTTGTTCGCGGGGAGATTCGGACTT  344

Query  241  GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCGGGT  300
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  345  GCGCCATCAGCCAATAGGAAGGCGACAGCTGGACTTAGGTTGGAGGCACGTGACTCAGGT  404

Query  301  CTACAGACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT  360
            ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  405  CTACAAACGGGTGACCCGGCCGGGTTCACGCTTGCGGACACTTTGGCTTGTGGCACCGTT  464

Query  361  GGTCATATCATCGGTGTTGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTAAAAT  420
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
Sbjct  465  GGTCATATCATCGGTGTAGGAGTTGTCCTTGGCCTTAAAAACATTGGTGCTATTTGAAGT  524

Query  421  TATTAATGCTCTTTTATTT  439
            |  ||| ||||||||||||
Sbjct  525  TCCTAAAGCTCTTTTATTT  543



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20861115835


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5