BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922127
Length=2785
Score E
Sequences producing significant alignments: (Bits) Value
AT1G30610.1 | Symbols: EMB88, EMB2279 | pentatricopeptide (PPR)... 2198 0.0
> AT1G30610.1 | Symbols: EMB88, EMB2279 | pentatricopeptide (PPR)
repeat-containing protein | chr1:10846676-10850517 FORWARD
LENGTH=3021
Length=3021
Score = 2198 bits (1190), Expect = 0.0
Identities = 1337/1407 (95%), Gaps = 14/1407 (1%)
Strand=Plus/Plus
Query 557 TGTGAAATGGAGTAAGAGTGGTGAGTCTTCAGTGACTGTG-CAAGAAGATGAGAGCTTTA 615
||||||||||||||| |||||||| |||||||||||| || | | |||||||||||||||
Sbjct 753 TGTGAAATGGAGTAATAGTGGTGAATCTTCAGTGACTATGCCTA-AAGATGAGAGCTTTA 811
Query 616 GGAGAAGGTACTCGAAGCAGGAGCATCACCGTTCCTCTGA-A-A--C------A-T-CGA 663
||||||| ||||| |||||||||||||||||||||||||| | | | | | | |
Sbjct 812 GGAGAAGATACTCTAAGCAGGAGCATCACCGTTCCTCTGATACATCCAGAGGGATTGCAA 871
Query 664 GAGGTTCCACAGTTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGATTTCCCAGAATAG 723
||||||| | || |||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 872 GAGGTTCAAAAGGTGATGAATTGGAGCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAG 931
Query 724 CCAAAGATGCAAGATGGAGTAAGAGTGGTGAATCTTTAGTGACTTTGTCAGAATATGAGA 783
||||||||| ||||||||||||||||| ||||||||||||| || |||||||| ||||||
Sbjct 932 CCAAAGATGTAAGATGGAGTAAGAGTGATGAATCTTTAGTGCCTGTGTCAGAAGATGAGA 991
Query 784 GTTTCAGGAGACGGAATCCCAAGCAGGAGATGGTGAGGTATCAGCGTGCCTCTGACACAC 843
||||||||||| ||||||| |||||||||||||||||||||||||||| |||||| |||
Sbjct 992 GTTTCAGGAGAGGGAATCCGAAGCAGGAGATGGTGAGGTATCAGCGTGTCTCTGATACAT 1051
Query 844 CGAGAGGGATTGAGAGAGGTTCCAAAGGAAATGGATTGGATCTCCTTGCTGAAGAAAGGC 903
||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1052 CGAGAGGGATTGAGAGAGGTTCCAAAGGAGATGGATTGGATCTTCTTGCTGAAGAAAGGC 1111
Query 904 GAATTGAGAGATTAGCCAACGAGAGGCATGAGATAAGAAGTAGCAAATTGAGTGGAACCG 963
| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1112 GGATTGAGAGATTAGCCAATGAGAGGCATGAGATAAGAAGTAGCAAATTGAGTGGAACCA 1171
Query 964 GGAGAATTGGTGCTAAGAGAAatgatgatgatgatgatAGCTTGTTTGCCATGGAAACTC 1023
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1172 GGAGAATTGGTGCTAAGAGAAATGATGATGATGATGATAGCTTGTTTGCCATGGAAACTC 1231
Query 1024 CTGCCTTTAGGTTTTCCGATGAGTCCAGTGACATAGTGGACAAGCCAGCTACTTCACGAG 1083
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1232 CTGCCTTTAGGTTTTCTGATGAGTCCAGTGACATAGTGGACAAGCCAGCTACTTCACGAG 1291
Query 1084 TCGAAATGGAAGATAGAATCGAAAAGTTAGCAAAAGTGTTGAATGGTGCAGACATCAATA 1143
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1292 TCGAAATGGAAGACAGAATCGAGAAGTTAGCAAAAGTGTTGAATGGTGCAGACATCAATA 1351
Query 1144 TGCCTGAGTGGCAGTTTTCCAAGGCGATCCGAAGTGCAAAAATCAGATACACAGATTACA 1203
||||||||||||||||||||||||||||| | ||||||||||||||||| || |||||||
Sbjct 1352 TGCCTGAGTGGCAGTTTTCCAAGGCGATCAGGAGTGCAAAAATCAGATATACGGATTACA 1411
Query 1204 CTGTAATGAGACTGATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAG 1263
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1412 CAGTAATGAGACTGATCCACTTTCTAGGGAAACTAGGAAACTGGAGACGAGTTCTTCAAG 1471
Query 1264 TCATCGAGTGGCTTCAAAGGCAAGACCGTTACAAATCGAACAAGCTAAGAATCATCTATA 1323
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1472 TCATTGAGTGGCTTCAAAGGCAAGACCGTTACAAATCTAACAAGATAAGAATCATCTATA 1531
Query 1324 CAACTGCACTAAACGTTCTTGGTAAATCAAGGAGGCCTGTGGAAGCCCTCAATGTATTCC 1383
||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1532 CAACTGCACTAAATGTTCTTGGTAAATCAAGGAGGCCTGTGGAAGCTCTCAATGTATTCC 1591
Query 1384 ACGCTATGCTGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 ACGCTATGCTGTTACAAATTTCATCATATCCGGATATGGTAGCATACCGTTCAATTGCAG 1651
Query 1444 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCCATGTGATTGATACAATGCGAT 1503
|||||||||||||||||||||||||||||||||||||| |||||||||| |||||| | |
Sbjct 1652 TCACACTTGGACAAGCTGGGCATATCAAGGAACTCTTCTATGTGATTGACACAATGAGGT 1711
Query 1504 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 1563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1712 CTCCACCTAAAAAGAAGTTCAAGCCAACAACACTTGAAAAATGGGATCCCCGGCTTGAAC 1771
Query 1564 CAGATGTTGTTGTTTATAATGCGGTGCTCAACGCATGTGTTCAACGAAAGCAATGGGAAG 1623
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1772 CAGATGTTGTTGTTTACAATGCGGTGCTCAACGCATGTGTTCAACGAAAGCAATGGGAAG 1831
Query 1624 GAGCATTCTGGGTATTGCAACAGTTGAAGCAACGTGGGCAAAAACCTTCTCCTGTAACCT 1683
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1832 GAGCATTCTGGGTATTGCAACAGTTGAAGCAACGAGGGCAAAAACCTTCTCCTGTAACCT 1891
Query 1684 ATGGTCTTGTCATGGAGGTGATGTTAGCATGTGAGAAGTACAATTTAGTTCATGAATTCT 1743
|||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1892 ATGGCCTCATCATGGAGGTAATGTTAGCATGTGAGAAGTACAATTTAGTTCATGAATTCT 1951
Query 1744 TCAGGAAGATGCAGAAATCTTCTATCCCTAATGCTCTAGCATATAGAGTTCTTGTTAATA 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1952 TCAGGAAGATGCAGAAATCTTCTATCCCTAATGCTCTAGCATATAGAGTTCTTGTTAATA 2011
Query 1804 CTCTATGGAAAGAAGGTAAAAGCGATGAGGCCATACATACGGTTGAGGATATGGAAAGCC 1863
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct 2012 CTCTATGGAAAGAAGGTAAAAGCGACGAGGCCGTACATACGGTTGAGGATATGGAAAGCC 2071
Query 1864 GTGGTATTGTTGGATCAGCTGCTCTTTACTACGACCTTGCTCGCTGTCTTTGTAGCGCAG 1923
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 2072 GTGGTATTGTTGGATCAGCTGCTCTTTACTACGACCTTGCTCGCTGTCTATGTAGCGCAG 2131
Query 1924 GAAGGTGTAATGAAGGTCTCAATATGG 1950
|||||||||||||||| ||||||||||
Sbjct 2132 GAAGGTGTAATGAAGGGCTCAATATGG 2158
Score = 1273 bits (689), Expect = 0.0
Identities = 765/802 (95%), Gaps = 4/802 (0%)
Strand=Plus/Plus
Query 1950 GCTGATCTTGATCATACCATCCAATGTCAGCTTAATAAGATATGTAGAGTTGCAAATAAA 2009
|||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 2212 GCTGATCTTGTTCATACCATCCAATTTCAGCTTAAGAAGATATGTAGAGTTGCAAATAAA 2271
Query 2010 CCTCTCGTGGTGACTTACACTGGCCTGATCCAAGCATGCCTCGACTCGGGAAACATCAAG 2069
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 2272 CCTCTCGTGGTGACTTACACTGGCCTGATCCAAGCATGCGTCGACTCGGGAAACATCAAG 2331
Query 2070 AATGCAGCTTACATCTTCGATCACATGAAGAAGGTCTGCAGCCCGAACTTGGTCACTTGT 2129
||||||||||||||||||||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 2332 AATGCAGCTTACATCTTCGATCAGATGAAGAAGGTCTGCAGCCCTAACCTAGTCACTTGC 2391
Query 2130 AACATAATGTTAAAAGCTTATCTACAAGGTGGGTTCTTTGAAGAAGCAAGGGAACTTTTC 2189
||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||
Sbjct 2392 AACATAATGCTAAAAGCTTATCTACAAGGCGGATTGTTTGAAGAAGCAAGGGAACTTTTC 2451
Query 2190 CAGAAGATGTCAGAAGACGGAAATCATATAAAAATCAGCTCGGATTTCGAATCAAGAGTA 2249
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2452 CAGAAGATGTCAGAAGACGGAAATCATATAAAAAACAGCTCGGATTTCGAATCAAGAGTA 2511
Query 2250 TTGCCAGACACGTACACGTTTAACACGATGCTAGACGA-GTGTGCTGAACaaaaaaaGTG 2308
|||||||||||||||||||| ||||||||||||||| | ||||||||||||| |||||||
Sbjct 2512 TTGCCAGACACGTACACGTTCAACACGATGCTAGAC-ACGTGTGCTGAACAAGAAAAGTG 2570
Query 2309 GGATGATTTTGGTTATGCGTATCGGGAGATGTTGCGTCATGGATACCATTTCAATGCGAA 2368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2571 GGATGATTTTGGTTATGCGTATCGGGAGATGTTGCGTCATGGATACCATTTCAATGCGAA 2630
Query 2369 ACGGCATCTCAGAATGGTACTTGAAGCTAGCAGAGCAGGAAAGGAGGAAGTGATGGAAGC 2428
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2631 ACGCCATCTCAGAATGGTACTTGAAGCTAGCAGAGCAGGAAAGGAGGAGGTGATGGAAGC 2690
Query 2429 GACATGGGAACACATGAGACGAAGTAATAGAATTCCGCCAGCGCCTCTAATCAAAGAAAG 2488
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2691 GACATGGGAACACATGAGACGAAGTAATAGAATTCCGCCATCGCCTCTAATCAAAGAAAG 2750
Query 2489 ATTCTTCAGGAAACTCGAGAAAGGCGATCATATTTCGGCTATCTCGTCTCTTGCTGATCT 2548
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2751 ATTCTTCAGGAAACTCGAGAAAGGCGATCATATTTCGGCTATATCATCTCTTGCTGATCT 2810
Query 2549 TGATGGAAAAATTGAGGAGACCGAGTTACGAGCATTTTCGACTTCCGCATGGTCCAGGGT 2608
| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||
Sbjct 2811 TAATGGAAAAATTGAGGAGACTGAGTTACGAGCATTTTCAACTTCCGCATGGTCCAGAGT 2870
Query 2609 CTTGTCCCGATTCGAGCAAGATTCGGTTTTGAGGTTAATGGACGATGTGAAGAGACGCGT 2668
|||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| |
Sbjct 2871 CTTGTCCCGATTTGAGCAAGATTCAGTTTTGAGGTTAATGGACGATGTGAACAGACGCCT 2930
Query 2669 GGGTTCAAGAAATGAGTCTTCGGATTCGGTTTTGGGGAATCTATTGAGTTCTTGTAAAGA 2728
||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2931 AGGTTCGAGAAGTGAGTCTTCGGATTCGGTTTTGGGGAATCTATTGAGTTCTTGTAAAGA 2990
Query 2729 GTT-TCTGAAGAACAGAACACA 2749
|| |||||||| |||||||||
Sbjct 2991 -TTATCTGAAGACCAGAACACA 3011
Score = 477 bits (258), Expect = 2e-133
Identities = 326/359 (91%), Gaps = 3/359 (1%)
Strand=Plus/Plus
Query 24 ATGGCGGTGACGATTTCGACGAATACTTTCGTAAATGCATCTTTTTTAGATGAAAGTCGG 83
|||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 1 ATGGCGGTGACGATTTCGACGAATGCTTTCGTAAATGCATCGCTTTTAGATGAAAGTCGG 60
Query 84 AATTTTTTCTGGAAACCATTGTTCCCTCAGCCTTCCTATAACTGCCGACGAGTCGTTCGT 143
|||| |||||||| ||||||||| | |||||| | |||||| ||||||||||||||||||
Sbjct 61 AATTCTTTCTGGAGACCATTGTTTCATCAGCCATACTATAATTGCCGACGAGTCGTTCGT 120
Query 144 CTGAATTCGAGGAAATCGAAGACTAAGGTAATGTTCTGCTTGAATTTGAACACGAAGGAG 203
|| ||||||||||||| ||| | ||||||||||| ||||||||||||||||||||||||
Sbjct 121 CTTAATTCGAGGAAATTGAATTCAAAGGTAATGTTTTGCTTGAATTTGAACACGAAGGAG 180
Query 204 GTTGGGATGCAAACGTCGGGTGATAAAGGTTTTGAATTCAAACCCAGTTTTGATCAGTAC 263
||||| |||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTGGTTTGCAAAAACCCGGTGATAAAGGTTTTGAATTCAAACCCAGTTTTGATCAGTAC 240
Query 264 TTGCAAATCATGGAATCGGTTAAAACAGCGAGGAAGAAGAAGAAATTCGACAGATTTAAA 323
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 241 CTGCAAATCATGGAATCGGTTAAAACAGCAAGGAAGAAGAAGAAATTCGACAGATTGAAA 300
Query 324 GTTGAGGATGATGATGGTGGAGTTGGAAATAGTGATAGTGTTGATTCGGAAGTGAAAGA 382
|||||||| ||||||||||||| ||| ||| ||||||||||| || | ||||||||||
Sbjct 301 GTTGAGGAAGATGATGGTGGAGGTGGGAATGGTGATAGTGTTTAT--G-AAGTGAAAGA 356
Score = 220 bits (119), Expect = 4e-56
Identities = 188/219 (86%), Gaps = 14/219 (6%)
Strand=Plus/Plus
Query 559 TGAAATGGAGTAAGAGTGGTGAGTCTTCAGTGACTGTGCAAGAAGATGAGAGCTTT-AGG 617
|||||| ||||||||||||||| |||||||||||||||| ||||||||||| ||| |||
Sbjct 533 TGAAATTGAGTAAGAGTGGTGAATCTTCAGTGACTGTGCCTGAAGATGAGAG-TTTCAGG 591
Query 618 AGAAGGTACTCGAAGCAGGAGCATCACCGTTCCTCTGA-A-A-C-------ATCG--AGA 665
| ||||||||| ||||||||| |||||||||||||||| | | | || | |||
Sbjct 592 AAAAGGTACTCTAAGCAGGAGTATCACCGTTCCTCTGATACATCGAGAGGGATTGAAAGA 651
Query 666 GGTTCCACAGTTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGATTTCCCAGAATAGCC 725
||||| | || |||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 652 GGTTCGAGAGGTGATGAATTGGATCTTGTTGTTGAAGAAAGGAGAGTTCAGAGAATAGCC 711
Query 726 AAAGATGCAAGATGGAGTAAGAGTGGTGAATCTTTAGTG 764
|||||||||||||||||||| ||| ||||||||| ||||
Sbjct 712 AAAGATGCAAGATGGAGTAAAAGTCGTGAATCTTCAGTG 750
Score = 196 bits (106), Expect = 8e-49
Identities = 154/177 (87%), Gaps = 4/177 (2%)
Strand=Plus/Plus
Query 416 AGATGTGAAGATTAAGAGTGGTGAGGC-AAAGGATGAAAGTTTCAGGAGGAGATACACAA 474
|||| ||||||||||||||||||| || ||| ||||||| |||||||| ||||||| |||
Sbjct 354 AGATATGAAGATTAAGAGTGGTGA-GCTAAAAGATGAAACTTTCAGGAAGAGATACTCAA 412
Query 475 GGCAGGAGATTGTAAGTGATAAACGTAATGTGAGAGGTTTCAATAGGAGTGAAGAAATTG 534
|||||||||||||||||||||||||||||| ||||| |||||| |||| || ||||||||
Sbjct 413 GGCAGGAGATTGTAAGTGATAAACGTAATGAGAGAGTTTTCAAGAGGAATGGAGAAATTG 472
Query 535 GAATTCAGAGAATAAACAA-AGATGTGAAATGGAGTAAGAGTGGTGAGTCTTCAGTG 590
|| ||| ||| | | | |||| |||||||||||||||||||||| |||||||||
Sbjct 473 AAAATCATAGAGTGG-CTACAGATTTGAAATGGAGTAAGAGTGGTGAATCTTCAGTG 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138360428794
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5