BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922278
Length=1516
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32060.1 | Symbols: PRK | phosphoribulokinase | chr1:1153253... 2518 0.0
> AT1G32060.1 | Symbols: PRK | phosphoribulokinase | chr1:11532533-11534639
FORWARD LENGTH=1556
Length=1556
Score = 2518 bits (1363), Expect = 0.0
Identities = 1468/1519 (97%), Gaps = 5/1519 (0%)
Strand=Plus/Plus
Query 1 ATTTCTTTCATTCTATCCTAAATCCTCATCACTCAACCTGAGCTCACAAAACTAAAC--A 58
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 21 ATTTCTTTCATTCTATCCTAAATCCTCATCACTCAACCTGAGCTCACAAAGCTAAACAAA 80
Query 59 AACAAAAGAGCTTAGGCGGAGAAGAAGAGGAAACCAAAAACACCAAACCAACAACAATGG 118
|| |||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||
Sbjct 81 AAAAAAAGAGCTTAGGCGGAGAAGAAGAGGAGACC-AAAACACCAAACAAACAACAATGG 139
Query 119 CTGTCTCAACTATCTACTCAACACAAGCCCTTAATTCAACTCATTTCTTAACCTCTTCTT 178
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 140 CTGTCTCAACTATCTACTCAACACAAGCTCTCAATTCAACTCATTTCTTAACCTCTTCTT 199
Query 179 CCTCCTCCAAACAAGTCTTCCTCTACCGTCGTCAACCACAAACCAACCGGAGATTCAACA 238
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 200 CCTCCTCCAAACAAGTCTTCCTCTACCGTCGTCAACCACAAACCAACCGTAGATTCAACA 259
Query 239 CACTCATCACTTGCGCACAAGAAACCATCGTGATCGGACTAGCTGCCGACTCTGGCTGCG 298
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 260 CACTCATCACTTGCGCACAAGAAACCATCGTGATCGGACTAGCTGCTGACTCTGGCTGCG 319
Query 299 GCAAAAGTACCTTTATGCGGAGGCTCACCAGCGTCTTTGGTGGCGCTGCTAAGCCACCAA 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 320 GCAAAAGTACCTTTATGCGGAGGCTCACCAGCGTCTTTGGTGGCGCTGCTAAGCCACCAA 379
Query 359 AAGGCGGGAACCCTGATTCCAACACACTCATCAGCGACACGACCACTGTGATCTGTCTTG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 AAGGCGGGAACCCTGATTCCAACACACTCATCAGCGACACGACCACTGTGATCTGTCTTG 439
Query 419 ACGATTACCATTCCTTGGATAGGTACGGTAGGAAAGAGCAGAAAGTCACCGCTTTGGACC 478
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 ATGATTACCATTCTTTGGATAGGTACGGTAGGAAAGAGCAGAAAGTCACCGCTTTGGACC 499
Query 479 CACGAGCTAATGACTTTGATCTCATGTATGAACAAGTCAAGGCTCTTAAGAGTGGTGTTG 538
|||| || ||||||||||||||||||||||| |||||||| |||||||||| |||| | |
Sbjct 500 CACGCGCCAATGACTTTGATCTCATGTATGAGCAAGTCAAAGCTCTTAAGAATGGTATAG 559
Query 539 CCGTTGAGAAACCGATTTATAACCATGTCACTGGACTTCTTGACCCGCCTGAGCTTATTC 598
|||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 560 CCGTCGAGAAACCGATTTATAACCATGTCACTGGACTTCTTGACCCTCCGGAGCTTATTC 619
Query 599 AGCCTCCTAAGATTCTTGTCATCGAAGGTCTTCACCCAATGTTTGATGAGAGAGTAAGAG 658
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 620 AGCCTCCTAAGATTCTTGTCATCGAAGGTCTTCACCCAATGTTTGATGAGCGAGTAAGAG 679
Query 659 ACTTACTAGACTTCAGTATCTACTTAGACATTAGCAACGAAGTCAAATTCGCTTGGAAAA 718
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 680 ACTTACTAGACTTCAGTATCTACTTGGACATTAGCAACGAAGTCAAATTCGCTTGGAAAA 739
Query 719 TTCAGAGGGACATGGCTGAAAGAGGTCACAGTTTGGAGAGCATCAAAGCGAGTATCGAAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TTCAGAGGGACATGGCTGAAAGAGGTCACAGTTTGGAGAGCATCAAAGCGAGTATCGAAG 799
Query 779 CCCGAAAGCCCGACTTCGATGCATTCATCGACCCGCAAAAGCAGTATGCGGATGCGGTCA 838
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 800 CCCGAAAGCCCGACTTCGATGCATTCATCGACCCGCAAAAGCAGTACGCGGATGCGGTCA 859
Query 839 TTGAAGTGCTTCCTACGACGCTGATCCCAGATGACAACGAAGGGAAAGTGTTGAGAGTGA 898
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 860 TAGAAGTGCTTCCTACGACTCTGATCCCAGATGACAACGAAGGGAAAGTGTTGAGAGTGA 919
Query 899 GACTGATAATGAAGGAAGGAGTTAAGTACTTCAGCCCGGTTTATCTGTTTGATGAAGGTT 958
|| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||
Sbjct 920 GATTGATAATGAAGGAAGGTGTTAAGTACTTCAGCCCGGTTTACCTGTTCGATGAAGGTT 979
Query 959 CAACAATCTCGTGGATCCCTTGCGGCCGCAAACTCACTTGCTCGTACCCTGGCATCAAGT 1018
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 980 CAACCATCTCGTGGATTCCTTGCGGCCGCAAACTCACTTGCTCGTACCCTGGCATCAAGT 1039
Query 1019 TCAACTACGAACCTGATTCATACTTCGACCATGAGGTATCGGTTTTGGAGATGGATGGAC 1078
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1040 TCAACTACGAACCTGACTCCTACTTCGACCATGAGGTATCAGTTTTGGAGATGGATGGAC 1099
Query 1079 AGTTTGATAGACTGGACGAGCTGATTTACGTGGAGAGTCACTTGAGCAACCTCTCGACCA 1138
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1100 AATTTGATAGACTGGACGAGCTGATTTACGTGGAAAGTCACTTGAGCAACCTCTCGACCA 1159
Query 1139 AATTCTACGGCGAAGTCACTCAACAAATGCTCAAACATGCTGACTTCCCGGGTAGCAACA 1198
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1160 AATTCTACGGAGAAGTCACTCAACAAATGCTCAAACATGCTGATTTCCCGGGTAGCAACA 1219
Query 1199 ACGGGACTGGTCTATTCCAAACCATTGTTGGATTGAAGATCAGAGATCTCTATGAGCAGC 1258
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 ACGGTACTGGTCTTTTCCAAACCATTGTTGGATTGAAGATCAGAGATCTCTATGAGCAGC 1279
Query 1259 TCATTGCCAACAAAGCCACTGCTCGTGCAGAAGCTAAAGCCTAAAACAAACAAAGAGAAG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 1280 TCATTGCCAACAAAGCCACTGCTCGTGCAGAAGCTAAAGCCTAAAACAAACGAAGCGAAG 1339
Query 1319 CCAAATAGAACGCGTCGATAAATCCATCCGCAGtttcttctttt-cttatttctttcttt 1377
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1340 CCAAATAGAACGCGTCGATAAATACATCCGCAGTTTCTTCTTTTTCTTATTTCTTTCTTT 1399
Query 1378 ctttATGCGTTGTTTACCGCAGATTTTCATGGCGAAAAGGACGGTCTTGCTTGTTTTGTA 1437
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1400 CTTTATGCGTTGTTTACCGCGGATTTTCATGGCGAAAAGGACGGTCTTGCTTGTTT-GTA 1458
Query 1438 ATTTGTGTGGAGATAAAAAGAAAAAGCATGTAATGTAGAGAAGTTAATAGCAGAGCAATA 1497
||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 1459 ATTTGTGTGGAGATAAAAAGAAAAAGCCTGTAATGTAGAGAAGTGAATAGCAGAGCAATA 1518
Query 1498 ACAGTTCAGTTTATAGAAC 1516
|||||||||||||||||||
Sbjct 1519 ACAGTTCAGTTTATAGAAC 1537
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74798812050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5