BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922300
Length=388
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32210.1 | Symbols: ATDAD1 | Defender against death (DAD fam... 623 4e-178
AT2G35520.2 | Symbols: DAD2 | Defender against death (DAD famil... 383 7e-106
> AT1G32210.1 | Symbols: ATDAD1 | Defender against death (DAD family)
protein | chr1:11605857-11607768 REVERSE LENGTH=654
Length=654
Score = 623 bits (337), Expect = 4e-178
Identities = 372/389 (96%), Gaps = 2/389 (1%)
Strand=Plus/Plus
Query 1 TTGTTGTTCTTCGATTCG-AAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTT 59
|||||||||||||||| | |||||||||||||||| |||||||||||||||||||| |||
Sbjct 97 TTGTTGTTCTTCGATT-GAAAATGGTGAAATCGACGAGTAAGGATGCTCAGGATCTATTT 155
Query 60 CGATCTCTTCGTTCTGCTTATTCCGCTACTCCGACTAATCTGAAGATCATCGACTTGTAT 119
||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 156 CGATCTCTTCGGTCTGCTTATTCTGCTACTCCGACTAATCTTAAGATCATCGACTTGTAT 215
Query 120 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGCTTATATGGCTTTGGTGGGATCA 179
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 216 GTCGTTTTCGCTGTCTTCACCGCTCTGATTCAGGTGGTTTATATGGCTTTGGTGGGATCA 275
Query 180 TTTCCGTTTAACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCT 239
||||| |||||||| |||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 276 TTTCCATTTAACTCGTTCCTATCTGGAGTTCTCTCTTGTATCGGGACAGCAGTTCTTGCT 335
Query 240 GTTTGCCTTCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAG 299
|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 336 GTTTGCCTCCGGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTAGCACCTGAG 395
Query 300 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTC 359
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 396 AGAGCTTTTGCTGATTTTGTTCTCTGCAACTTAGTCCTCCATTTGGTGATCATCAACTTC 455
Query 360 CTCGGATAGAGGTTTCACTCTCCTATCTA 388
|||||||||||||||||||||||| ||||
Sbjct 456 CTCGGATAGAGGTTTCACTCTCCTGTCTA 484
> AT2G35520.2 | Symbols: DAD2 | Defender against death (DAD family)
protein | chr2:14921493-14922841 FORWARD LENGTH=629
Length=629
Score = 383 bits (207), Expect = 7e-106
Identities = 310/358 (87%), Gaps = 13/358 (4%)
Strand=Plus/Plus
Query 18 GAAATGGTGAAATCGACAAGTAAGGATGCTCAGGATCTGTTTCGA-TCTCTTCGTTCTGC 76
||||||||||||||||| |||||||||||||||||||| ||| | ||||||| |||||
Sbjct 92 GAAATGGTGAAATCGACTAGTAAGGATGCTCAGGATCT-CTTCCATTCTCTTCACTCTGC 150
Query 77 TTATTCCGCTACTCCGACTAATCTGAAGATCATCGA-CTTGTATG-TCGTTTTCGCTGTC 134
|||| ||||||| || || ||||| ||||||||||| ||| |||| | | |||||| |||
Sbjct 151 TTATACCGCTACACCAACGAATCTCAAGATCATCGACCTT-TATGTTTG-TTTCGCGGTC 208
Query 135 TTCACCGCTCTGATT---CAGGTGGCTTATATGGCT-TTGGTGGGATCATTTCCGTTT-A 189
||||| ||| ||||| ||||| ||||| |||||| || || ||||| ||||| ||| |
Sbjct 209 TTCACAGCTTTGATTCAGCAGGTTGCTTACATGGCTCTT-GTTGGATCGTTTCC-TTTCA 266
Query 190 ACTCATTCCTATCTGGAGTTCTCTCTTGTATCGGGACTGCAGTTCTGGCTGTTTGCCTTC 249
||||||| || |||||||||||||| ||||||||||| || ||||| ||||| ||||| |
Sbjct 267 ACTCATTTCTCTCTGGAGTTCTCTCGTGTATCGGGACAGCGGTTCTTGCTGTCTGCCTCC 326
Query 250 GGATTCAAGTGAACAAAGAAAACAAGGAATTCAAGGATTTGGCACCGGAGAGAGCTTTTG 309
||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||
Sbjct 327 GGATTCAAGTGAACAAAGAAAACAAGGAATTTAAGGATTTAGCACCGGAGCGAGCTTTTG 386
Query 310 CTGATTTTGTTCTCTGCAACTTAGTCCTCCACTTGGTGATCATCAACTTCCTCGGATA 367
|||||||||| ||||||||||||||||||||| | |||||||| |||||| | |||||
Sbjct 387 CTGATTTTGTCCTCTGCAACTTAGTCCTCCACCTAGTGATCATAAACTTCTTGGGATA 444
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18297460636
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5