BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922345

Length=586
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamil...   529    1e-149


> AT1G32550.2 | Symbols: FdC1 | 2Fe-2S ferredoxin-like superfamily 
protein | chr1:11771969-11774117 REVERSE LENGTH=585
Length=585

 Score =  529 bits (286),  Expect = 1e-149
 Identities = 355/387 (92%), Gaps = 9/387 (2%)
 Strand=Plus/Plus

Query  21   ATGGCTCTGATTTTGCCGTGTACATTTTATACTTCGCTTCAGCAGAAGAAGTTTCCGATT  80
            ||||||||||||||||| |||||||||| ||||||||||||| ||||||| |||||||||
Sbjct  1    ATGGCTCTGATTTTGCCCTGTACATTTTGTACTTCGCTTCAGAAGAAGAATTTTCCGATT  60

Query  81   AATCGGAGATATTTTCCGAATCTCCGTCGAGGAGTTACGACTACGACTTGTGAGTTCCGA  140
            |||||||||||| || ||||| |||||||||||| ||||||| |||| ||||||||||| 
Sbjct  61   AATCGGAGATATATTACGAATTTCCGTCGAGGAGCTACGACTGCGACGTGTGAGTTCCGG  120

Query  141  ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGAATGTTCCTTCACATAAG  200
            ||||||||||||||||||||||||||||||||||||||||||  ||||||||| || || 
Sbjct  121  ATTCCTGTAGAAGTTTCCACTCCATCAGATAGAGGATCGTTGGTTGTTCCTTCGCACAAA  180

Query  201  GTCACTGTTCACGATCGACAACGAGGAGTTGTTCACGAATTTGAGGTTCCAGAGGATCAG  260
            ||||||||||||||||||||||||||||| |||||||||||       |  |||||||||
Sbjct  181  GTCACTGTTCACGATCGACAACGAGGAGTGGTTCACGAATT-------C--GAGGATCAG  231

Query  261  TATATATTGCACTCAGCTGAATCTCAGAACATTACTCTTCCGTTTGCTTGCAGGCATGGT  320
            ||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  232  TATATATTGCATTCAGCTGAATCTCAGAACATTAGTCTTCCGTTTGCTTGCAGGCATGGT  291

Query  321  TGCTGTACTAGTTGTGCCGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCACAAGCATTG  380
            || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct  292  TGTTGTACTAGTTGTGCTGTACGTGTAAAATCTGGAGAGCTGAGGCAGCCTCAAGCATTG  351

Query  381  GGAATATCAGCAGAGCTGAAGTCCCAG  407
            |||||||||||||| ||||||||||||
Sbjct  352  GGAATATCAGCAGAACTGAAGTCCCAG  378


 Score =  267 bits (144),  Expect = 1e-70
 Identities = 154/159 (97%), Gaps = 0/159 (0%)
 Strand=Plus/Plus

Query  408  GGGTATGCACTTCTTTGTGTGGGTTTCCCTACATCTGACCTTGAAGTAGAAACACAAGAC  467
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  427  GGGTATGCACTTCTTTGTGTGGGTTTCCCCACATCTGACCTTGAAGTAGAAACACAAGAC  486

Query  468  GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTCGCTCGTGGACCAATTGAAAGA  527
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  487  GAGGACGAGGTCTACTGGCTACAATTTGGAAGATACTTTGCTCGTGGACCAATTGAAAGA  546

Query  528  GACGATTACGCCCTTGAACTCGCCATGGGAGACGAGTAG  566
            ||||||||||| |||||||||||||||||||| || |||
Sbjct  547  GACGATTACGCTCTTGAACTCGCCATGGGAGATGAATAG  585



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28181356467


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5