BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922353 Length=2116 Score E Sequences producing significant alignments: (Bits) Value AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 ... 3227 0.0 > AT1G32640.1 | Symbols: ATMYC2, RD22BP1, JAI1, JIN1, MYC2, ZBF1 | Basic helix-loop-helix (bHLH) DNA-binding family protein | chr1:11798810-11800988 REVERSE LENGTH=2179 Length=2179 Score = 3227 bits (1747), Expect = 0.0 Identities = 2005/2128 (94%), Gaps = 23/2128 (1%) Strand=Plus/Plus Query 1 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTCTGGA 60 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 56 ACCGGTCACCGGTTTATGGAATGACTGATTACCGGCTACAACCAACGATGAATCTTTGGA 115 Query 61 CCACCGACGATAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 120 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 116 CCACCGACGACAACGCTTCTATGATGGAAGCTTTCATGAGCTCTTCCGATATCTCAACTT 175 Query 121 TATGGCCACCGGCAACGACCACGACGGCGACTACGACTACGACGACAACATCAACTACGG 180 ||||||| ||||| |||| || || | || ||| | ||||| || | ||||| || Sbjct 176 TATGGCCTCCGGCGTCGACGACAAC--C-ACGACGGCGACGAC-TGAA-A-CAACTCCGA 229 Query 181 CGACGGCGATGGAGATTCCGGCACCGGCGGGATTTAACCAGGAGACTCTTCAGCAACGTT 240 || ||||||||||||||||||||| |||||||||||| || ||||||||||||||||||| Sbjct 230 CGCCGGCGATGGAGATTCCGGCACAGGCGGGATTTAATCAAGAGACTCTTCAGCAACGTT 289 Query 241 TACAAGCTTTGATTGAAGGGACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCGT 300 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 290 TACAAGCTTTGATTGAAGGAACACACGAAGGTTGGACCTACGCTATATTCTGGCAACCGT 349 Query 301 CGTACGATTTCTCCGGCGCCTCCGTGCTCGGCTGGGGAGATGGTTATTACAAAGGTGAAG 360 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 350 CGTATGATTTCTCCGGCGCCTCCGTGCTCGGATGGGGAGATGGTTATTACAAAGGTGAAG 409 Query 361 AAGATAAAGCTAAGCCGAGACAGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGATC 420 |||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 410 AAGATAAAGCAAACCCGAGACGGAGATCGAGTTCGCCGCCGTTTTCTACTCCGGCGGATC 469 Query 421 AGGAGTACCGGAAAAAAGTGTTGAGAGAGCTTAATTCGTTGATCTCCGGCGGTGTTGCTC 480 |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||| Sbjct 470 AGGAGTACAGGAAAAAAGTGTTGAGAGAGCTTAACTCGTTGATCTCCGGTGGTGTTGCTC 529 Query 481 CGTCGGATGACGCCGTTGACGAGGAAGTGACGGATACGGAGTGGTTTTTCTTGGTTTCGA 540 ||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||| Sbjct 530 CGTCGGATGACGCTGTTGATGAGGAGGTGACGGATACGGAATGGTTTTTCTTGGTTTCGA 589 Query 541 TGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCGGGTAAAGCGTTTTCGACGGGTAACG 600 |||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| Sbjct 590 TGACGCAGAGCTTCGCTTGCGGTGCGGGATTAGCTGGTAAAGCGTTTGCAACGGGTAACG 649 Query 601 CGGTTTGGGTTTCTGGGTCGGATCAATTATCCGGGTCGAGTTGTGAACGGGCTAAGCAAG 660 ||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||| Sbjct 650 CGGTTTGGGTTTCCGGGTCAGATCAATTATCCGGGTCGGGTTGTGAACGGGCTAAGCAAG 709 Query 661 GTGGAGTTTTTGGGATGCAGACAATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAAG 720 | ||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 710 GAGGAGTGTTTGGGATGCATACTATTGCGTGTATTCCTTCGGCGAACGGAGTTGTGGAAG 769 Query 721 TCGGGTCAACGGAGCAGATCCGACAGAGTTCGGATCTTATTAACAAGGTTCGAATTCTTT 780 ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| Sbjct 770 TCGGGTCAACGGAGCCGATCCGACAGAGTTCGGACCTTATTAACAAGGTTCGAATTCTTT 829 Query 781 TCAATTTCGACGGCGGAGCTGGAGATTTGTCGGGTCTTAATTGGAATCTTGACCCGGATC 840 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 830 TCAATTTCGACGGCGGAGCTGGAGATTTATCGGGTCTTAATTGGAATCTTGACCCGGATC 889 Query 841 AAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAGCACCTGAATCCAACG 900 |||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||| Sbjct 890 AAGGTGAGAACGACCCGTCTATGTGGATTAATGACCCGATTGGAACACCTGGATCTAACG 949 Query 901 AACCGGGTAATGGAGCTCCGAGTTCTAGCTCCCAGGTTTTTTCAAAGTCTATACAGTTCG 960 |||||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| | Sbjct 950 AACCGGGTAACGGAGCTCCAAGTTCTAGCTCCCAGCTTTTTTCAAAGTCTATTCAGTTTG 1009 Query 961 AGAATGGTAGCTCAAGCACAATAACTGAAAACCCGAATCCGGATCCGACTCCGAGTCCGG 1020 |||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||| Sbjct 1010 AGAACGGTAGCTCAAGCACAATAACCGAAAACCCGAATCTGGATCCGACTCCGAGTCCGG 1069 Query 1021 TTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTCT 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1070 TTCATTCTCAGACCCAGAATCCGAAATTCAATAACACTTTCTCCCGAGAACTTAATTTTT 1129 Query 1081 CGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATAGTAAGCTTCGGTAATG 1140 |||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| Sbjct 1130 CGACGTCAAGTTCTACTTTAGTGAAACCAAGATCCGGCGAGATATTAAACTTCGGCGATG 1189 Query 1141 ATGGTAAACGGAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAACCACAATTCG 1200 | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1190 AAGGTAAACGAAGCTCCGGAAACCCGGATCCAAGTTCTTATTCGGGTCAAACACAATTCG 1249 Query 1201 AAAACAAAAGAAAGAAGTCTATGGTATTGAACGAAGATAAAGTCCTATCATTCGGAGATA 1260 ||||||||||||||| ||| ||||| ||||||||||||||||| |||||||||||||||| Sbjct 1250 AAAACAAAAGAAAGAGGTCGATGGTTTTGAACGAAGATAAAGTTCTATCATTCGGAGATA 1309 Query 1261 AAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTACCGG 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 1310 AAACCGCCGGAGAATCAGATCACTCCGATCTAGAAGCTTCCGTCGTGAAAGAAGTAGCAG 1369 Query 1321 TAGAGAAACGTCCAAAGAAACGAGGAAGAAAACCAGCAAACGGTAGAGAAGAGCCACTAA 1380 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1370 TAGAGAAACGTCCAAAGAAACGAGGAAGAAAGCCAGCAAACGGTAGAGAAGAGCCACTAA 1429 Query 1381 ACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAATCAAAGATTCTACGCGTTAC 1440 |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 1430 ACCACGTCGAAGCAGAGAGACAAAGACGCGAGAAACTAAACCAAAGATTCTACGCGTTAC 1489 Query 1441 GAGCGGTTGTACCAAACGTTTCGAAAATGGATAAAGCTTCGCTT-CTTGGAGACGCAATC 1499 |||||||||||||||||||||| |||||||||||||||||| || || || ||||||||| Sbjct 1490 GAGCGGTTGTACCAAACGTTTCAAAAATGGATAAAGCTTCG-TTACTCGGTGACGCAATC 1548 Query 1500 TCTTACATCAACGAGCTTAAATCGAAAGTAGTCAAAACAGAATCAGAGAAAATACAAATC 1559 |||||||||||||||||||||| ||||||||||||||||| ||||||||| | |||||| Sbjct 1549 GCTTACATCAACGAGCTTAAATCCAAAGTAGTCAAAACAGAGTCAGAGAAACTCCAAATC 1608 Query 1560 AAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGGT 1619 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1609 AAGAACCAGCTCGAGGAAGTGAAACTCGAGCTCGCCGGAAGAAAAGCGAGTGCTAGTGGA 1668 Query 1620 GGAGATATGTCGTCGTCGTGTTCGTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAAG 1679 |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1669 GGAGATATGTCGTCTTCGTGTTCTTCGATTAAACCGGTGGGGATGGAGATTGAAGTGAAG 1728 Query 1680 ATAATTGGTTGGGATGCGATGATTAGAGTTGAATCAAGTAAGAGGAATCATCCGGCGGCG 1739 |||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||| Sbjct 1729 ATAATTGGTTGGGACGCAATGATTAGAGTTGAATCTAGTAAGAGGAATCATCCGGCGGCG 1788 Query 1740 AGGTTGATGTCGGCGTTGATGGATTTGGAGCTGGAGGTGAATCACGCGAGTATGTCGGTG 1799 |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| Sbjct 1789 AGGTTGATGTCGGCGTTGATGGATTTGGAGTTGGAAGTGAATCACGCGAGTATGTCGGTG 1848 Query 1800 GTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGATTTAGGATCTATACGCAG 1859 ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1849 GTTAACGATTTGATGATTCAACAAGCGACGGTGAAGATGGGTTTTAGGATCTATACGCAA 1908 Query 1860 GAACAGCTCCGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGA-AATTT 1918 ||||||||| ||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 1909 GAACAGCTCAGAGCAAGTTTGATTTCAAAAATCGGTTAAAAGGGTGTGTTTTGGGAAGTT 1968 Query 1919 TAGAAAGTTATGGGGTCAAATCATTATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTAG 1978 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1969 TAGAAAGTTATGGGGTCAAATCATAATTAATTCGTTTTAGTGGCTTCAGTAATTTTGTAG 2028 Query 1979 ATTT-AGTTTTGTT-GTAAGAAAAATCTTAAAATAGAGCGACAAGTTTCTT-TT--GCTC 2033 |||| |||||||| | || ||||||||||||||||||||||||||||||| || |||| Sbjct 2029 ATTTTAGTTTTGTAAG-AA-AAAAATCTTAAAATAGAGCGACAAGTTTCTTCTTTTGCTC 2086 Query 2034 TATGTT-GAGTCTTATATCGTT--ATTGTTGTATCATCC--AATGTGTAAACGTGTACAT 2088 |||||| |||||| ||||||| ||||||||||| ||| |||| |||||| |||| || Sbjct 2087 TATGTTTGAGTCTG-TATCGTTTTATTGTTGTATC-TCCTCAATGAGTAAACTTGTATAT 2144 Query 2089 ATTGATATGAATAATATGTGTTAGTTAC 2116 |||||||||| ||||||| ||||||||| Sbjct 2145 ATTGATATGAGTAATATGAGTTAGTTAC 2172 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104919139050 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5