BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922379
Length=1331
Score E
Sequences producing significant alignments: (Bits) Value
AT1G32860.1 | Symbols: | Glycosyl hydrolase superfamily protei... 1905 0.0
> AT1G32860.1 | Symbols: | Glycosyl hydrolase superfamily protein
| chr1:11907109-11908928 REVERSE LENGTH=1605
Length=1605
Score = 1905 bits (1031), Expect = 0.0
Identities = 1223/1315 (93%), Gaps = 16/1315 (1%)
Strand=Plus/Plus
Query 24 CAATGAAGCTTACCACCTTCCACCGCTCTTCTCTCATATTCCTCCTCTCAGTGACGGTT- 82
||||| ||||||||| |||||| |||||||||||| |||||||| ||||| | || ||
Sbjct 124 CAATGGAGCTTACCAGCTTCCATCGCTCTTCTCTCTTATTCCTCATCTCACTAAC-ATTG 182
Query 83 ATC---CTTCCGGCAACGGTGAGTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAAC 139
||| || ||| | || | |||||||||||||||||||||||||||||||||||||
Sbjct 183 ATCATTCTCCCGACGACAACAACTTCAATCGGAGTAAACTACGGTCAAATCGGAGACAAC 242
Query 140 CTACCATCACCATCCGACGTAATCCCACTAATAAAATCAATCGGTGCAACAAAAGTAAAA 199
|| || || ||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 243 CTCCCCTCCCCAACCGACGTAATCCCACTAATAAAATCAATCGGAGCAACAAAAGTAAAA 302
Query 200 CTCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATC 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 303 CTCTACGACGCAAATCCACAAATCCTCAAAGCTTTCTCCAACACCGGAATCGAATTCATC 362
Query 260 ATCGGACTCGGCAACGAATATCTCTCCAAAATGAAAGATCCTTCAAAAGCACT-AACATG 318
|||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 363 ATCGGACTCGGCAACGAATACCTCTCCAAAATGAAAGATCCTTCAAAAGC-CTTAACATG 421
Query 319 GATCAAACAAAACGTTACTCCATTTTTACCGGCGACTAACATCACCTGTATCACAATCGG 378
|||||||||||||||||||||||||||||| |||||||||||||| || || || |||||
Sbjct 422 GATCAAACAAAACGTTACTCCATTTTTACCTGCGACTAACATCACATGCATAACTATCGG 481
Query 379 AAACGAAATCCTCGCTCTCAACGACTCTTCACTCACAATCAATCTCCTCTCGGCGATGCA 438
||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||
Sbjct 482 TAACGAAATCCTCGCTCTCAACGACTCTTCACTCACTACCAATCTCCTCCCAGCGATGCA 541
Query 439 AGGAGTTCACTCTGCTTTAATCACCGCCGGACTCTCCGATCAAATAACCGTCACCACCGC 498
|||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 542 AGGAGTTCACTCTGCTTTAATCACCGCCGGTCTCTCCGATCAAATCTCCGTCACCACCGC 601
Query 499 ACATTCTCTCTCAATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCAGA 558
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 602 GCATTCTCTCTCGATCCTCAAATCCTCATTCCCACCTTCCGCCGGCGAGTTTCAACCGGA 661
Query 559 TCTACTCGATTCACTAACACCGATCTTAGAATTCCACCGGAAAACTGATTCTCCGTTCTT 618
|||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 662 TCTACTCGATTCGCTAACTCCGATCTTAGAATTTCACCGGAAAACTGATTCTCCGTTCTT 721
Query 619 AATCAACGCGTATCCTTTCTTCGCTTTCAAAGGAAACCCTAAAGAAGTACCTCTAGATTT 678
|||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||
Sbjct 722 AATCAACGCGTATCCTTTCTTCGCTTACAAAGGAAACCCTAAAGAAGTTCCTTTAGATTT 781
Query 679 CGTTCTGTTTCAACCCAATCAAGGAATCGTAGATCCGGCCACCGGATTTCACTACGACAA 738
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 782 CGTTCTGTTTCAACCTAATCAAGGAATCGTAGATCCGGCCACCGGTTTTCACTACGATAA 841
Query 739 CATGTTGTTCGCTCAAATCGACGCCGTGTACTCTGCTTTAGCGGCGGCGGGGTATAAATC 798
||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 842 CATGTTGTTCGCTCAGATCGACGCTGTCTACTCTGCTTTAGCGGCGGCGGGGTTTAAATC 901
Query 799 GTTGAGAGTTGAGATATCGGAGAC-GGGATGGCCGTCGAAAGGTGACGACGATGAGGTTG 857
|||||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| |
Sbjct 902 GTTGAGAGTTGAGATATCGGAGACTGGG-TGGCCATCGAAAGGTGACGACGATGAGGTCG 960
Query 858 GAGCTACGCCGGAGAATGCAAAGAGGTATAACGGAAACTTGATTAAGCTGATGATGAGTG 917
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 961 GAGCTACGCCGGAGAATGCGAAGAGGTATAACGGAAACTTGATTAAGATGATGATGAGTG 1020
Query 918 GTAAAAAGACTAAAACGCCCCTGAAGCCTAACAATGATCTTAGTATTTACGTTTTTGCCC 977
|||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||
Sbjct 1021 GTAAAAAGACTAAAACGCCCTTGAAGCCTAATAATGATCTAAGTATTTACGTTTTTGCCC 1080
Query 978 TTTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGGTTGTTTAAAC 1037
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1081 TTTTTAATGAGAATTTGAAACCTGGTCCGACGTCGGAGAGGAATTATGGCTTGTTTAAAC 1140
Query 1038 CTGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGACGTCGTGAGAGGGGCTA 1097
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 1141 CTGATGGGACTCAGGCTTATTCACTTGGGTTTGCTTTAAACGATGTCGTGAGAGGTGCTA 1200
Query 1098 GTGGTGGCGGTGGCGGTGGCGGTGGCAATAGTAGTAGTGGTGGAGGAAGGGAAAAGACGC 1157
||||||| ||| |||||| || | ||||||||||| |||||||||||||| ||| | |
Sbjct 1201 GTGGTGGTGGTACCGGTGGTGG-G--AATAGTAGTAGCGGTGGAGGAAGGGATAAGTCAC 1257
Query 1158 CGGTGTTTCCGGTTTCTCCGGTGGCGCCGGATAGTGCGTCCACTGGTTATTTGGCAATTT 1217
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 1258 CGGTGTTTCCGGTTTCTCCGGTGGCCCCGGATAGTGCGTCCACTGGTTATTTAGCAATTT 1317
Query 1218 CTGCTTCTCCAGTAACGGGGAGAAGAAAAGGGAAAGGGGCAATATTGTCAATGGTGGTAG 1277
| |||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |
Sbjct 1318 CGGCTTCTCCGGTAACGGGGAAAAGAAAAGGGAAAGGGGCAATATTGTCATTGGTGGT-G 1376
Query 1278 TGAGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTTGAGTT-AACT 1331
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 1377 --AGCATGTTACTGGCGAGACACTTACTTTGATTACACGAAACTCGAGTTTAACT 1429
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65511711225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5