BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922501

Length=566
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34000.1 | Symbols: OHP2 | one-helix protein 2 | chr1:123579...   856    0.0  


> AT1G34000.1 | Symbols: OHP2 | one-helix protein 2 | chr1:12357910-12358966 
REVERSE LENGTH=824
Length=824

 Score =  856 bits (463),  Expect = 0.0
 Identities = 534/567 (94%), Gaps = 10/567 (2%)
 Strand=Plus/Plus

Query  1    CAATTCAACTAAACGAAAAGATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA  60
            |||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  46   CAATTCAACT-AACAAAAAAATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA  104

Query  61   ATCCATCATCTTCCTCTTCTTCATCTTCTTCAACAGCTTCGTCGTCTTTTAGATTCTCAA  120
            |||||||||| |  || || |  |||||||| ||||||||||||||||||||||||||||
Sbjct  105  ATCCATCATC-T--TCATC-T--TCTTCTTCGACAGCTTCGTCGTCTTTTAGATTCTCAA  158

Query  121  CGACGACTAAGCCATGTGTATTCATCATCAGATGTTCTCAGACAGAAGGTCCTTTAAGAA  180
            | ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct  159  CAACGACTAAGCCATGTGTCTTCATCATCAGATGCTCTCAGACAGAAGGTCCTTTAAGAA  218

Query  181  GGCCCTCGGCTCCTCCTACTCTCCGGGAGCCGCAAAAACCTGTTCCTCCATCGCAGCCGT  240
            | || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
Sbjct  219  GACCATCGGCTCCTCCTACTCTCCGGGAGCCTCAAAAACCTGTTCCTCCATCACAGCCAT  278

Query  241  CTT-CTGCTCCTCCTCCTCCTCCCCCGCCGCAGAAAGCTGTGGCTGTTGATGGGAAGAGT  299
            ||| || ||||||||||| |||| ||||||||||||||||| ||||||||||||||||||
Sbjct  279  CTTCCT-CTCCTCCTCCTTCTCCGCCGCCGCAGAAAGCTGTAGCTGTTGATGGGAAGAGT  337

Query  300  GTAACTACGGTGGAGTTTCAGAGACAGAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG  359
            |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  338  GTAACTACAGTGGAGTTTCAGAGACAAAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG  397

Query  360  AAGAAGCTTGAAGCTGCTGGTCAAGGTCCtttttttGGTTTCCAACCCAAAAATGAGATC  419
            || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  398  AAAAAGCTTGAAGCTGCTGGTCAAGGTCCCTTTTTTGGTTTCCAACCCAAAAATGAGATC  457

Query  420  TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGAATGCTCACAGAGTATGCAACA  479
            |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct  458  TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGTATGCTCACAGAGTATGCAACA  517

Query  480  GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCGAATTTCGGCATTGTAGACTTG  539
            |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||
Sbjct  518  GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCAAATTTCGGCATTCTAGACTTG  577

Query  540  GAATAATAAGAGTGTTGTTAT-ATATA  565
            ||||||||||||||||||| | |||||
Sbjct  578  GAATAATAAGAGTGTTGTTGTTATATA  604



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27176673527


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5