BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922501 Length=566 Score E Sequences producing significant alignments: (Bits) Value AT1G34000.1 | Symbols: OHP2 | one-helix protein 2 | chr1:123579... 856 0.0 > AT1G34000.1 | Symbols: OHP2 | one-helix protein 2 | chr1:12357910-12358966 REVERSE LENGTH=824 Length=824 Score = 856 bits (463), Expect = 0.0 Identities = 534/567 (94%), Gaps = 10/567 (2%) Strand=Plus/Plus Query 1 CAATTCAACTAAACGAAAAGATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 60 |||||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| Sbjct 46 CAATTCAACT-AACAAAAAAATGTCAGTAGCTTCACCGATTCAATGTATCAGGATTCTAA 104 Query 61 ATCCATCATCTTCCTCTTCTTCATCTTCTTCAACAGCTTCGTCGTCTTTTAGATTCTCAA 120 |||||||||| | || || | |||||||| |||||||||||||||||||||||||||| Sbjct 105 ATCCATCATC-T--TCATC-T--TCTTCTTCGACAGCTTCGTCGTCTTTTAGATTCTCAA 158 Query 121 CGACGACTAAGCCATGTGTATTCATCATCAGATGTTCTCAGACAGAAGGTCCTTTAAGAA 180 | ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||| Sbjct 159 CAACGACTAAGCCATGTGTCTTCATCATCAGATGCTCTCAGACAGAAGGTCCTTTAAGAA 218 Query 181 GGCCCTCGGCTCCTCCTACTCTCCGGGAGCCGCAAAAACCTGTTCCTCCATCGCAGCCGT 240 | || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| | Sbjct 219 GACCATCGGCTCCTCCTACTCTCCGGGAGCCTCAAAAACCTGTTCCTCCATCACAGCCAT 278 Query 241 CTT-CTGCTCCTCCTCCTCCTCCCCCGCCGCAGAAAGCTGTGGCTGTTGATGGGAAGAGT 299 ||| || ||||||||||| |||| ||||||||||||||||| |||||||||||||||||| Sbjct 279 CTTCCT-CTCCTCCTCCTTCTCCGCCGCCGCAGAAAGCTGTAGCTGTTGATGGGAAGAGT 337 Query 300 GTAACTACGGTGGAGTTTCAGAGACAGAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 359 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 338 GTAACTACAGTGGAGTTTCAGAGACAAAAGGCTAAAGAGCTTCAAGAGTACTTTAAACAG 397 Query 360 AAGAAGCTTGAAGCTGCTGGTCAAGGTCCtttttttGGTTTCCAACCCAAAAATGAGATC 419 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 398 AAAAAGCTTGAAGCTGCTGGTCAAGGTCCCTTTTTTGGTTTCCAACCCAAAAATGAGATC 457 Query 420 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGAATGCTCACAGAGTATGCAACA 479 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 458 TCCAATGGAAGGTGGGCTATGTTTGGTTTCGCAGTTGGTATGCTCACAGAGTATGCAACA 517 Query 480 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCGAATTTCGGCATTGTAGACTTG 539 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 518 GGATCAGACCTTGTTGATCAAGTTAAGATCCTTCTCTCAAATTTCGGCATTCTAGACTTG 577 Query 540 GAATAATAAGAGTGTTGTTAT-ATATA 565 ||||||||||||||||||| | ||||| Sbjct 578 GAATAATAAGAGTGTTGTTGTTATATA 604 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 27176673527 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5