BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg922543

Length=208
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G34245.1 | Symbols: EPF2 | Putative membrane lipoprotein | c...   272    8e-73


> AT1G34245.1 | Symbols: EPF2 | Putative membrane lipoprotein | 
chr1:12472868-12473754 FORWARD LENGTH=608
Length=608

 Score =  272 bits (147),  Expect = 8e-73
 Identities = 170/180 (94%), Gaps = 6/180 (3%)
 Strand=Plus/Plus

Query  3    aaaaaaaGGATTA-AAACCATGACGAAGTTTGTACGCAAGT-TCATGTTTTGCCTCGTCC  60
            ||||||| ||||| ||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct  105  AAAAAAAAGATTATAAA-CATGACGAAGTTTGTACGCAAGTAT-ATGTTTTGCCTCGTCC  162

Query  61   TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAATCA  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct  163  TAGTCTTCGCCGCGTGTTCTTTGGTCGTTAACTCCATTCGCACGCCGCCACTAAAAAACA  222

Query  121  CGGTCAATGGCGGACAAAAGAAAAACGCCGATGTAGAACAAGCTCAAAC-CGACCACAAG  179
            |||||||||||||| ||||||||||||||||| |||||||||||||||| | ||||||||
Sbjct  223  CGGTCAATGGCGGAGAAAAGAAAAACGCCGATATAGAACAAGCTCAAACGC-ACCACAAG  281



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9305749935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5