BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922573
Length=1486
Score E
Sequences producing significant alignments: (Bits) Value
AT1G34630.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2307 0.0
> AT1G34630.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: Mitochondrial import inner membrane translocase subunit
Tim17/Tim22/Tim23 family protein (TAIR:AT5G51150.1); Has
323 Blast hits to 315 proteins in 124 species: Archae - 0;
Bacteria - 0; Metazoa - 95; Fungi - 110; Plants - 73; Viruses
- 0; Other Eukaryotes - 45 (source: NCBI BLink). | chr1:12685200-12687641
FORWARD LENGTH=1769
Length=1769
Score = 2307 bits (1249), Expect = 0.0
Identities = 1396/1469 (95%), Gaps = 2/1469 (0%)
Strand=Plus/Plus
Query 10 CCGCCGTCGTCATGTCGCCTTCCGGCGAATCGACGAACGGTTCTCGTTGCTCATCATGCA 69
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 107 CCGCCGTCGTCATGTCGCCGTCCGACGAATCGACGAACGGTTCTCGTTGCTCATCATGCA 166
Query 70 TCTCTGGTGACATA-TATGGCGACGATTTCCGTAAATCGGATGAGTTTACATGCAAACAA 128
|||| | |||| | ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 167 TCTCCAGCGACA-ACGATGGCAACGATTTCGGTAAATCGGATGAGTTTACATGCAAACAA 225
Query 129 TGCAAAAATTCCGATTCGAAATCTAAATCGAAATCGGTTAATGATTCAGAGAAGCTTCGA 188
|||||||| |||||||||||||| ||||| |||||||| |||||||| || |||||||||
Sbjct 226 TGCAAAAACTCCGATTCGAAATCGAAATCAAAATCGGTGAATGATTCGGATAAGCTTCGA 285
Query 189 AGAATCATCGTCGCTTCCGTCAAAGGATTCACTATAGGTACTGGTTTAAAAGGTGGATTA 248
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 286 AGAATCATCGTCGCTTCCGTCAAAGGATTCACTATAGGTACTGGTTTAAAAGGTGGTTTA 345
Query 249 GCGATTTTCTCAATCGTCGCTCGTTTCGCTCGTCGCCGTAGATCTTCTCTTCAATCGAGG 308
|| |||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct 346 GCTATTTTCTCAATCGTCGCTCGTTTCGCTCGTCGTCGTAGATCTTCTCCTCAATCTAGG 405
Query 309 AAAACCGGAGAGTTTTCGAATAGTGAAGCTATTGCTATGGGGATTAAGGAGACATTAAGA 368
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 406 AAAACCGGAGAGTTTTCGAATAGTGAAGCTATCGCTATGGGGATTAAGGAGACGTTAAGA 465
Query 369 TATGGATTGTTCTTAGGAACTTTTGCTGGGACTTTTGTTTCAGTAGATGAAGCTATTGCT 428
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 466 TATGGATTGTTCTTAGGAACTTTTGCTGGGACTTTTGTTTCTGTAGATGAAGCTATTGCT 525
Query 429 GCTTTAGCAGGAGACAAGAGAACTGCAAAGTGGAGGGCCCTGTTTGCTGGATTGGTGGCT 488
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 526 GCTTTAGCAGGAGACAAGAGAACTGCAAAATGGAGGGCCCTGTTTGCTGGATTGGTGGCT 585
Query 489 GGACCATCTATGCTTCTCACAGGGCCAAATACTCAACATACAAGTTTGGCTGTTTATATA 548
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 586 GGACCATCTATGCTTCTCACAGGGCCAAATACGCAACATACGAGTTTGGCTGTTTATATA 645
Query 549 TTGATGCGTGCTGCGGTTCTTGCGTCGCGGTGCGGTATTAAAAGTAAACGGTTTGGTTCC 608
|||||||||||||||||||| || ||||| |||||||||||||||||||| |||||| ||
Sbjct 646 TTGATGCGTGCTGCGGTTCTCGCATCGCGTTGCGGTATTAAAAGTAAACGCTTTGGTACC 705
Query 609 ATATGCAAGCCGCTTACTTGGAAACATGGAGATTTATTTCTCATGTGTCTCTCATCTTCA 668
|| |||||||| |||||||||||||||||||||||||| |||||||||||||| || |||
Sbjct 706 ATTTGCAAGCCACTTACTTGGAAACATGGAGATTTATTCCTCATGTGTCTCTCTTCCTCA 765
Query 669 CAGATTTTGTCTGCTTACATTTTGAAACAAGAAAGTCTTCCTTCATCGTACAAGTCTTTC 728
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 766 CAGATTTTGTCTGCTTACATTTTGAAACAAGAAAGCCTTCCTTCATCGTACAAGTCTTTC 825
Query 729 CTTAACAAACAAGGTGGGAAGGATCTTTCTATCTTACAAGGCGTAAAAGATATTGCAAGC 788
||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
Sbjct 826 CTTAACAAACAAGGTGGGAAGGATCTTTCAATCTTACAAGGCGTAAAAGATATCGCAACC 885
Query 789 GCCCAACCGTTCACTAATCTAAGAGCGATTGAGAAATATTACAAGTCTGTTGGAGTTGAT 848
|| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 886 GCGCAACCGTTCACTAATTTAAGAGCGATTGAGAAATATTACAAGTCTGTTGGAGTTGAT 945
Query 849 ATCAAACTAGATCCTAACATGAAAGTCCCCTGTTCGATAATACATGGAAATGAGTCATGT 908
|||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 946 ATCAAACTGGATCCTACCATGAAAGTCCCCTGTACGATAATACATGGAAATGAGTCATGT 1005
Query 909 GTTAAGCATGGTATTACATTTTTCCTGCAAGCTTACAAGAGGGCGTTACCTGTCTATGTC 968
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1006 GTTAAGCATGGTGTTACATTTTTCCTTCAAGCTTACAAGAGGGCGTTACCTGTCTATGTC 1065
Query 969 CCTGTCTATTTGATTCCAGCGCTAATCGTTCATCGTCAAGACCTGCTAAAAAAGCAATAC 1028
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1066 CCTGTGTATTTGATTCCAGCGCTAATAGTCCATCGTCAAGACCTGCTAAAAAAGCAATAC 1125
Query 1029 TCTATACTTGGCAAGGGTCTTCTGGGCACAGCGAGATCAAGTTTGTTTCTCGCTACTTAC 1088
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1126 TCTATACTTGGCAAGGGTCTTCTGGGCACAGCGAGATCAAGTTTGTTTCTCGCTACTTAC 1185
Query 1089 TGCTCTTCTGCCTGGGCTTGGACTTGTCTACTTTTCCGGACTTTTGAGACATGCAACATA 1148
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 1186 TGCTCTTCTGCCTGGGCTTGGACTTGTCTACTATTCCGCACTTTTGAGACATGCAACATA 1245
Query 1149 CCTCTTGTGGCCATAGCAACGTTCCCAACAGGTCTGGCTTTAGCTATTGAGAAGAAAAGC 1208
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1246 CCGCTTGTGGCCATAGCAACATTCCCAACAGGTCTGGCTTTAGCTATTGAGAAGAAAAGC 1305
Query 1209 AGAAGGATAGAGATATCACTCTACTGCTTAGCGAGGGCAATAGAGAGCTTCTTCACTTGC 1268
|||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||
Sbjct 1306 AGAAGGATAGAGATATCACTATACTGCTTAGCGAGGGCGATAGAGAGCTTCTTTACTTGC 1365
Query 1269 ATGACAGATGCAGGATACATTCGACCGCACAAGAGTCTAAGAAGAGCAGATGTGGTTGTG 1328
|||||||| ||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1366 ATGACAGAGGCAGGATACATTCGACCGCCCAAGAGTTTAAGAAGAGCGGATGTGGTTGTG 1425
Query 1329 TTCAGCGTTTCAACAGCCATTATAATGCATTGTTACGCACAGGAAAGAGAAGTATTTCGA 1388
||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1426 TTCAGCGTTTCGACAGCCATTATAATGCATTGTTACGCACAAGAAAGAGACGTATTTCGA 1485
Query 1389 TCAAAATACTTAAACGTGCTAGATTGGGTTTTCGGTGTtcctcctcctcctcctcccccc 1448
||||||||||| ||||| ||||||||||| ||||||||||||||||| |||||| | ||
Sbjct 1486 TCAAAATACTTGAACGTACTAGATTGGGTCTTCGGTGTTCCTCCTCCCCCTCCTGCTCCT 1545
Query 1449 ccTTGCGAAACAACCTAGAGACATTCACT 1477
||||||||||||||||||||||||||||
Sbjct 1546 TCTTGCGAAACAACCTAGAGACATTCACT 1574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73292795700
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5