BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922594
Length=1135
Score E
Sequences producing significant alignments: (Bits) Value
AT1G31190.1 | Symbols: IMPL1 | myo-inositol monophosphatase lik... 1777 0.0
> AT1G31190.1 | Symbols: IMPL1 | myo-inositol monophosphatase like
1 | chr1:11144772-11146930 FORWARD LENGTH=1335
Length=1335
Score = 1777 bits (962), Expect = 0.0
Identities = 1066/1116 (96%), Gaps = 7/1116 (1%)
Strand=Plus/Plus
Query 24 GGAAGCATGTCAATGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 83
|||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 114 GGAAACATGTCATTGAGAATCTCTCACTTACCCAGATCATCTCTTCCGCTGCAAAACCCA 173
Query 84 TTTTCATGCCGGACA-TCAAACAGAAATTTCCGACATGGGTGTTCGACGATTTTGTCTAA 142
||||| |||||||| | ||||||| ||||||| || ||||| ||| ||||||||||||
Sbjct 174 ATTTCAGGCCGGACAGT-GAACAGAACTTTCCGATATCGGTGTACGAGGATTTTGTCTAA 232
Query 143 CAGCTTCAAGTCCACTTCAAGACTTCAAACAAAAGCTCTTGTGTCTGAGATTTCTGATCA 202
|||||||||||||| | ||||||||||| |||||| || |||||||| ||||||||||
Sbjct 233 TAGCTTCAAGTCCACAACGAGACTTCAAACCAAAGCTGTTCTGTCTGAGGTTTCTGATCA 292
Query 203 GACGC-ATTATCCTAGAATCGGCGCTAAATCCACCGGAACTATATCGCCGGCACATCTCC 261
||||| | ||||| ||||||||||||||| |||||||||||||||| |||||||| ||||
Sbjct 293 GACGCGA-TATCCCAGAATCGGCGCTAAAACCACCGGAACTATATCTCCGGCACACCTCC 351
Query 262 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTGAAGTCGTTGAACTCGCCGCTAAAACCGGCGCTGAGGTGGTTATGGAAGCTGTAAATA 411
Query 322 AGCCAAGGAATATCACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 381
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 AGCCAAGGAATATTACTTATAAAGGTCTCAGTGACTTAGTAACTGATACTGATAAAGCAA 471
Query 382 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 GCGAGGCTGCTATTTTGGAAGTAGTGAAGAAGAATTTTAGTGATCATCTTATTCTTGGTG 531
Query 442 AAGAAGGAGGTATTATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 501
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AAGAAGGAGGTATCATCGGCGATTCGTCTTCTGATTACCTCTGGTGCATTGATCCTCTAG 591
Query 502 ATGGAACAACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCTGTCGGTGTTCTGT 561
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 592 ATGGAACTACAAATTTTGCTCATGGATATCCCAGTTTTGCTGTTTCCGTCGGTGTTCTGT 651
Query 562 ATCGTGGAAACCCCGCCGCTGCTTCTGTGGTTGAGTTTGTCGGTGGTCCGATGTGTTGGA 621
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 652 ATCGTGGAAATCCCGCCGCTGCTTCTGTGGTAGAGTTTGTCGGTGGTCCGATGTGCTGGA 711
Query 622 ACACTCGAACCTTTTCTGCAACAGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 681
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 712 ACACTCGAACCTTTTCTGCAACTGCAGGTGGTGGAGCATTGTGTAACGGGCAAAAAATTC 771
Query 682 ATGTCAGTGAAG-CTGATGCTGTGGAGAGAGCACTTCTTATCACCGGGTTTGGTTATGAA 740
|||||||| ||| | ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 ATGTCAGT-AAGACCGATGCTGTGGAGAGAGCACTTCTTATCACAGGGTTTGGTTATGAA 830
Query 741 CATGATGATGCATGGAGTACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 800
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 831 CATGATGATGCATGGAGCACTAACATGGAACTGTTCAAAGAGTTTACTGATGTGAGTCGG 890
Query 801 GGAGTGCGAAGACTCGGTGCTGCAGCAGTTGACATGTGTCATGTGGCACTTGGGATTGCG 860
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 891 GGAGTGCGAAGACTCGGTGCTGCTGCAGTTGACATGTGTCATGTTGCACTTGGGATTGCG 950
Query 861 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 920
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 951 GAATCATATTGGGAGTACCGTTTAAAGCCATGGGACATGGCTGCTGGTGTTCTTATAGTT 1010
Query 921 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1011 GAGGAAGCTGGAGGAGCTGTGACTCGGATGGACGGAGGGAAGTTTTCTGTGTTTGATAGG 1070
Query 981 TCTGTTTTGGTTTCCAACGGCGTTCTTCACTCCAAGCTTCTGGAGAGAATTGCACCCGCA 1040
||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1071 TCTGTTTTGGTCTCCAACGGCGTTCTTCACCCCAAGCTTCTGGAAAGAATTGCACCCGCA 1130
Query 1041 ACTGAGAATTTGAAGTTGAAAGGAATCGATTTCTCGCTGTGGTTTAAACCGGAAGATTAT 1100
|||||||||||||||| ||||||||||||||||||| | ||||| |||||||||||||||
Sbjct 1131 ACTGAGAATTTGAAGTCGAAAGGAATCGATTTCTCGTTATGGTTCAAACCGGAAGATTAT 1190
Query 1101 CATACAGAGCTTTAAGACTTGTTCAA-AGAGGTATA 1135
|||||||||||||||||||||||||| | |||||||
Sbjct 1191 CATACAGAGCTTTAAGACTTGTTCAAGAAAGGTATA 1226
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55672404405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5