BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922640 Length=1198 Score E Sequences producing significant alignments: (Bits) Value AT1G31350.1 | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221335-11... 1799 0.0 > AT1G31350.1 | Symbols: KUF1 | KAR-UP F-box 1 | chr1:11221335-11222786 REVERSE LENGTH=1452 Length=1452 Score = 1799 bits (974), Expect = 0.0 Identities = 1120/1192 (94%), Gaps = 4/1192 (0%) Strand=Plus/Plus Query 1 AACTGTAACGGCCTGAATCAATGTCTACCGCCGCCGCGGAATCACCACCGGCGAAGCGAA 60 ||||| |||||| |||||||||||| ||| ||||||| |||||||| |||||||| |||| Sbjct 91 AACTGAAACGGCGTGAATCAATGTCAACCACCGCCGCAGAATCACCGCCGGCGAAACGAA 150 Query 61 GAAGAATAGTCACCGGAAATGAAAACTCGGCTTTAATCGAAGGACTTCCCGATCATATAT 120 |||||| ||||||||||||||||||||| |||||||||||||||||||||||||| || | Sbjct 151 GAAGAACAGTCACCGGAAATGAAAACTCCGCTTTAATCGAAGGACTTCCCGATCACATCT 210 Query 121 CAGAGATCTGTCTTTC-CAAAGTTAACCGTCCGTCGTTACTCTCCGCCGTATGTACACGG 179 ||||||||||||| || | ||| ||||||||||||||||||||||||| ||||||||| Sbjct 211 CAGAGATCTGTCTGTCTC-TCGTTCACCGTCCGTCGTTACTCTCCGCCGTGTGTACACGG 269 Query 180 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCTCTCTACGCGCTTCTC 239 |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || Sbjct 270 TGGCGCCGTCTTCTTTACTCGCCGGAATTTCCTTCGTTTCCGTCACTCTACGCTCTTTTC 329 Query 240 GTTGACTCAACCTCGGATCCGGGTCTGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 299 || || ||||| |||||| |||||| |||||||||||||||||||||||||||||||||| Sbjct 330 GTCGATTCAACATCGGATACGGGTCGGGTCAACCCGTCAGTCCGGTTTATGTGTTTCAAC 389 Query 300 CCGGTTTATTCAAAATGGGATCCGCTTCCTCCTCCTCCACCTGACCCGCCTCTTCACCGG 359 ||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct 390 CCGGTTTCTTCAAAATGGTATCCGCTTCCTCCTCCACCACCTGACCCGCCTCTTCACCGG 449 Query 360 ATTCTCTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 419 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 450 ATTCTTTACCGTCATCCGTCGTTTATCTCCTTTAATTTACCGATTCAATGCGTCTCCGCC 509 Query 420 GCCGGGAAACTCATCCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCTATCTCTCAC 479 ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 510 GCCGGAAAACTCATTCTCATCGCCGGAAGTAACCAACAACTCTCTCCGGCGATCTCTCAC 569 Query 480 CCGTTAATTTTCGATCCAATTTCATCATCCTGGAGCTCCGGTCCTCAAATCGGATCTCCA 539 ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| Sbjct 570 CCGTTAATTTTCGATCCAATTTCGTCATCCTGGAGCTCCGGTCCTCGAATCGGATCTCCA 629 Query 540 AGACGGTGGTGCGCTACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 599 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 630 AGACGGTGGTGCGCCACCGGAGCTTGCGACGGAGCTATCTACATCGCAAGCGGAATTAGT 689 Query 600 TCTCAGTTCTCCTCAACCGTTGCGAAATCAATCGAGAAATTAGATCTAACCGATCAAAAC 659 ||||||||||| |||||||| |||||||| |||||||||||||||||||||| |||||| Sbjct 690 TCTCAGTTCTCATCAACCGTCGCGAAATCTGTCGAGAAATTAGATCTAACCGAACAAAAC 749 Query 660 CGCAATAACCGGCGGTTTAATTGGGAGAAATTAAGAGATATGAGAGATTTACGGTTTAGT 719 || ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 750 CGGAATAACCACCGGTTTAATTGGGAGAAATTGAGAGATATGAGAGATTTACGGTTTAGT 809 Query 720 CGAGAAGCTATAGATGCCGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTAAAAGGA 779 |||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||| Sbjct 810 CGAGAAGCTATAGACGCTGTTGGATATAGAAGAAAGCTTTTAATGGTAAATGTTAAAGGA 869 Query 780 GACGCTATTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAAGCTATGCCG 839 ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 870 GACGCGGTTAAAGAAGGAGCTATATACGACGTCGTTAAAGATGATTGGGAACCTATGCCG 929 Query 840 GAGGAGATGTTGGTTGGATGGAGAGGTCCGGTGGCGGCGATGGAGGAGGAGATTCTTTAT 899 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 930 GAGGAGATGTTGGTTGGATGGAGAGGCCCGGTTGCGGCGATGGAGGAGGAGATTCTTTAT 989 Query 900 TCGGTggatgagaggagagggacagtgagaaagtacgatgatgagaagagagagtggaga 959 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 990 TCGGTGGATGAGAGGAGAGGGACAGTGAGAAAGTACGATGATGAGAAGAGAGAGTGGAGA 1049 Query 960 gaagtGGCGGTGGTTGATGGTGGAGAAGAGTTACTTAAAGGAGCTACGCAGGTTACGGCG 1019 ||||||| |||||||| |||||||||||| | ||||||||||||||||| || |||||| Sbjct 1050 GAAGTGGTTGTGGTTGAAGGTGGAGAAGAGATGCTTAAAGGAGCTACGCAAGTAACGGCG 1109 Query 1020 GATTCAGGGAAACTTTGTGTTGTTAC-GGTTGATGGGAAGATTGTTGTGGTGGATGTTGT 1078 ||||| || ||||||||||||||||| ||| |||||||| ||||||||||||||||||| Sbjct 1110 GATTCCGGTAAACTTTGTGTTGTTACTGGT-GATGGGAAAATTGTTGTGGTGGATGTTGC 1168 Query 1079 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGCTTCCTGATGGGCTTGAACCGGTTTCGGT 1138 ||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 1169 GGCGGAGCCGGCGAAGATTTGGAATGTTGAGATTCCTGATGGACTTGAACCGGTTTCGGT 1228 Query 1139 TCATGTATTACCAAGAATGAGTCAACCGGAGTTTTGCTGACGtttttttttt 1190 |||||| ||||||||||||||||||||| | |||||||||||| |||||||| Sbjct 1229 TCATGTTTTACCAAGAATGAGTCAACCGAATTTTTGCTGACGTATTTTTTTT 1280 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 58835038740 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5