BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922683
Length=923
Score E
Sequences producing significant alignments: (Bits) Value
AT1G35340.1 | Symbols: | ATP-dependent protease La (LON) domai... 1415 0.0
> AT1G35340.1 | Symbols: | ATP-dependent protease La (LON) domain
protein | chr1:12977765-12979910 FORWARD LENGTH=1115
Length=1115
Score = 1415 bits (766), Expect = 0.0
Identities = 868/919 (94%), Gaps = 0/919 (0%)
Strand=Plus/Plus
Query 1 CTGCGATTCACATTTTCCCGATGACTTCCGCTTTAATCTCCTCAAATCTCTCTTCCTCTT 60
||||||||||||||||||||||||||||| || ||||||||||||| |||||||||||||
Sbjct 53 CTGCGATTCACATTTTCCCGATGACTTCCACTCTAATCTCCTCAAACCTCTCTTCCTCTT 112
Query 61 TCTTCCCTACTAAAAATCTCCACCGGATTCGAATCCCGGCGACTTCAATTCCCGGAGGTT 120
||||||| || ||||| ||||||| |||||||||||| ||||||||||||||||| |||
Sbjct 113 TCTTCCCAACCCAAAATATCCACCGAATTCGAATCCCGACGACTTCAATTCCCGGAAGTT 172
Query 121 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCGAAATCACTCAATCTTCCACTTCTTC 180
|||||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct 173 TCAACATTCGCGCACGCCGTTCAAAAATCGTCGCCAAATCTCTCGATCTTCCTCTTCTTC 232
Query 181 CCTTCAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTACAACTTTGCATTTGTATGAAG 240
| || |||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct 233 CTTTTAGCATGAGCGAGGTTCTTGTACCAACGGAGAGTAAAACTTTGCATTTATATGAAG 292
Query 241 CAAGGTACTTAGCTTTACTTGAAGAGTCGATGAAGAGGAAGAAGAATATGTTTGTTCATT 300
| ||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||
Sbjct 293 CTAGGTACTTAGCTTTACTCGAAGAGTCTATGAAGAGAAAGAAGAATATGTTTGTTCATT 352
Query 301 TCATTCTGGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 360
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 TCATTCTAGATCCTATTTCGATTAGTGAGACTGCAACAGAAGCTTCTTTTGCTGCTAGAT 412
Query 361 ATGGATGTTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGCGCGCTTGTTTCGA 420
|||| || |||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 413 ATGGTTGCTTGGTACTTATTGAAAACGTTGAGAGATTGGATGTTGGTGCACTTGTTTCGA 472
Query 421 TAAGAGGTGCTGGTCGTGTGAAGATTTCGCGGTTTTTAGGGGCAGATCCTTATTTGTCCG 480
||||||| || |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 473 TAAGAGGCGCGGGTCGTGTGAAGATTTCGAGGTTTTTAGGGGCAGATCCTTACTTGTCCG 532
Query 481 GAGAGGTCAGACCAATACAGGATCGTGTGAATTATGAGAGCAGCAATGAATTAACCTCAA 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 533 GAGAGGTCAGACCAATACAGGATCGTATGAATTATGAGAGCAGCAATGAATTAACCTCAA 592
Query 541 AAATCTCCCAGCTGAAGGAATCTATTAAGAATCTTAACAGCTTGGAGATCAAACTTAAGG 600
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 593 AAATCTCCCAGCTGAAGGAATCTATTAAAAATCTTAACAGCTTGGAGATCAAACTTAAGG 652
Query 601 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CTCCAGCAGACTCGCCGCTACAAACTCGTCTCATTAACTCTCTAAACTGGGCTGAAGATG 712
Query 661 AGCCGCCGGTTGAGTTTGACGAATCATTCTTACCTTCCCTCCAAGAACGTCTATCCTTTT 720
|||||||||| || ||||||||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 713 AGCCGCCGGTCGACTTTGACGAATCATTCGTACCTTCTCTCCAAGAACGTCTATCATTTT 772
Query 721 CTGCATTTCAACCCATTTCCGGATCGACAAAGTCGGAACTATCAAGGTTACAACAAGAGA 780
| |||||||||||||| || |||||||| |||||||||||||||||||||||||||||||
Sbjct 773 CAGCATTTCAACCCATCTCTGGATCGACGAAGTCGGAACTATCAAGGTTACAACAAGAGA 832
Query 781 AATTAAAAGCAATGGATATGAAAGATACAATAGAGAGGTTAGAACTCTCAATGGGACTCA 840
|| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 833 AAATAAAAGCAATGGATATGAAAGATACAATAGAGAGATTAGAACTCTCAATGGGACTCA 892
Query 841 TAAAGGAGAACATTTCCTCAATTGCAGCCAAACTCGCCATCCAATCCTTGGACATTCGCT 900
||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 893 TAAAGGAGAACATCTCCTCAATTGCAGCCAAACTCGCTATCCAATCCTTGGATATTCGCT 952
Query 901 AATCGTTACACTATACAAT 919
|| | || ||||||||||
Sbjct 953 AACCACTAGACTATACAAT 971
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45110264006
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5