BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922760 Length=1205 Score E Sequences producing significant alignments: (Bits) Value AT1G36050.1 | Symbols: | Endoplasmic reticulum vesicle transpo... 1919 0.0 > AT1G36050.1 | Symbols: | Endoplasmic reticulum vesicle transporter protein | chr1:13450204-13453683 FORWARD LENGTH=1733 Length=1733 Score = 1919 bits (1039), Expect = 0.0 Identities = 1129/1173 (96%), Gaps = 3/1173 (0%) Strand=Plus/Plus Query 1 TCGTCCCCGGAGGTGTTT--AAATGGCCGGGATCTTGAATAAACTGCGGAATCTAGATGC 58 |||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||||| Sbjct 242 TCGTTCCCGGAGGTGTTTAAAAATGGCCGGGATCTTGAATAAATTGCGGAATCTAGATGC 301 Query 59 ATATCCTAAGATCAATGAAGATTTCTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 118 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 302 ATATCCTAAGATCAATGAAGATTTTTACAGCCGTACATTATCCGGCGGAGTTATCACTCT 361 Query 119 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 362 CCTCTCCTCCGTTGTTATGTTCCTTCTCTTCTTCTCCGAGCTCCGTCTTTATCTTCATAC 421 Query 179 AGTCACAGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGTATCAACTT 238 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 422 AGTCACCGAGACGAAGCTTATAGTAGATACTTCAAGGGGAGAGACGTTACGCATCAACTT 481 Query 239 TGATATTACTTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 298 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 482 TGATATTACGTTTCCTGCTCTAGCATGTTCGATTCTTAGTGTTGATGCTATGGATATTAG 541 Query 299 TGGAGAGCTGCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 358 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 542 TGGAGAGCTTCATCTTGACGTGAAACATGATATCATAAAGAGAAGATTAGATTCTAATGG 601 Query 359 CAACACTATAGAAGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAAACCACTGCA 418 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 602 CAACACTATAGAGGCAAGACAGGACGGAATAGGCGCTACTAAGATTGAAAACCCACTGCA 661 Query 419 GAAACATGGTGGCAGGCTGGAACATAACGAGACTTACTGTGGTTCTTGCTATGGTGCTGA 478 |||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||| Sbjct 662 GAAACATGGTGGCAGGCTGGGACATAATGAGACTTACTGTGGTTCTTGCTATGGGGCTGA 721 Query 479 AGCGGAAGAGCATGACTGCTGCAATTCATGTGAGGATGTTCGTGAAGCTTATAGAAAGAA 538 ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 722 AGCGGAAGAGCATGACTGCTGCAATTCGTGTGAGGATGTTCGTGAAGCATATAGAAAGAA 781 Query 539 AGGTTGGGGGGTTACAAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 598 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 782 AGGTTGGGGGGTTACTAATCCAGATTTGATTGACCAGTGTAAACGAGAAGGTTTTCTACA 841 Query 599 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATCTACGGGTTCTTGGAGGTCAATAA 658 |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| Sbjct 842 AAGAGTAAAGGATGAAGAAGGTGAAGGGTGTAATATATATGGGTTCTTGGAGGTCAATAA 901 Query 659 GGTGGCTGGAAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGTGTGCACGT 718 ||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 902 GGTGGCTGGGAACTTCCACTTTGCTCCTGGGAAAAGCTTTCATCAGTCGGGCGTGCATGT 961 Query 719 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAATATAAGTCATAAGATCAATAGACT 778 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 962 TCACGATCTTCTTGCTTTTCAGAAAGACAGTTTTAACATAAGTCACAAGATCAATAGACT 1021 Query 779 GACTTATGGGGACTACTTTCCTGGTGTTGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 838 |||||||| |||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 1022 TACTTATGGAGACTACTTTCCTGGCGTCGTTAACCCTCTTGACAAAGTCGAGTGGAGTCA 1081 Query 839 AGACACACCTAATGCTATGTACCAATACTTCATCAAGGTTGTACCAACAGTATACACAGA 898 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1082 AGACACACCTAATGCTATGTACCAATACTTTATCAAGGTTGTACCAACAGTATACACAGA 1141 Query 899 TATCAGAGGACACACAATTCAGTCAAATCAGTTCTCGGTGACCGAACATGTAAAGAGCTC 958 ||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| Sbjct 1142 TATCAGAGGACACACAATTCAATCGAATCAGTTCTCAGTGACCGAACATGTAAAGAGCTC 1201 Query 959 AGAAGCGGGTCAGCTGCAATCCTTACCAGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1018 |||||| ||||| |||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct 1202 AGAAGCAGGTCAACTGCAATCTTTACCTGGAGTTTTCTTCTTCTATGATCTCTCTCCAAT 1261 Query 1019 CAAGGTAACATTTACGGAGGAACACATATCGTTCTTGCACTTCTTGACGAATGTTTGCGC 1078 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1262 CAAGGTAACATTTACGGAGGAACACATATCATTCTTGCACTTCTTGACGAATGTTTGCGC 1321 Query 1079 TATAGTCGGAGGTGTTTTTACAGTATCCGGGATAATAGATGCGTTTATATACCATGGTCA 1138 ||||| |||||||| || ||||| |||||||||||||| |||||||||||||||||||| Sbjct 1322 CATAGTTGGAGGTGTCTTCACAGTGTCCGGGATAATAGACGCGTTTATATACCATGGTCA 1381 Query 1139 AAAAGCTATCAAGAAGAAGATGGAAATTG-GTA 1170 ||||||||||||||||||||||||||||| ||| Sbjct 1382 AAAAGCTATCAAGAAGAAGATGGAAATTGTGTA 1414 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59186442555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5