BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922794
Length=2782
Score E
Sequences producing significant alignments: (Bits) Value
AT1G37130.1 | Symbols: NIA2, B29, NIA2-1, CHL3, NR, NR2, ATNR2 ... 4449 0.0
> AT1G37130.1 | Symbols: NIA2, B29, NIA2-1, CHL3, NR, NR2, ATNR2
| nitrate reductase 2 | chr1:14158527-14161938 FORWARD LENGTH=3130
Length=3130
Score = 4449 bits (2409), Expect = 0.0
Identities = 2660/2782 (96%), Gaps = 14/2782 (1%)
Strand=Plus/Plus
Query 12 CTTTCCAACATGGCGGCCTCAGTAGATAATCGCCAATACGCTCGGCTCGAGCCAGGTTTG 71
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 82 CTTTCCAACATGGCGGCCTCTGTAGATAATCGCCAATACGCTCGTCTCGAGCCAGGTTTG 141
Query 72 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTCCCAGGCCGGTCCGATTCCTCTAA---G 128
|||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 142 AACGGCGTGGTTCGTTCTTACAAACCTCCCGTTCCAGGCCGGTCCGATTCCCCTAAGGCG 201
Query 129 -----G---CAAACCA-GAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 179
| ||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 202 CACCAGAACCAAACCACCAACCAAACCGTGTTCTTGAAACCAGCCAAGGTTCATGACGAT 261
Query 180 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 262 GACGAAGACGTGTCGAGCGAAGACGAGAACGAGACACACAACAGCAACGCCGTGTACTAC 321
Query 240 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGAGAC 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 322 AAGGAGATGATAAGAAAATCCAACGCCGAGCTTGAACCGTCCGTTTTGGACCCGAGGGAC 381
Query 300 GAATACACGGCTGATAGTTGGATCGAGCGTAACCCTTCCATGGTCCGTCTCACAGGGAAA 359
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 382 GAATACACGGCTGATAGCTGGATCGAGCGTAACCCTTCCATGGTACGTCTCACAGGGAAA 441
Query 360 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 442 CATCCCTTCAACTCCGAGGCGCCTCTTAACCGTTTAATGCACCACGGGTTTATCACCCCT 501
Query 420 GTCCCGTTGCACTACGTTCGTAACCACGGCCATGTCCCTAAGGCCCAATGGGCTGAATGG 479
|||||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 502 GTCCCGTTGCACTACGTTCGTAACCACGGCCACGTCCCTAAAGCCCAATGGGCCGAATGG 561
Query 480 ACGGTCGAGGTGACCGGGTTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 539
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 562 ACGGTCGAGGTGACCGGATTCGTCAAACGGCCCATGAAATTCACCATGGACCAGCTCGTC 621
Query 540 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACACTAGTTTGCGCGGGGAACCGCCGTAAG 599
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 622 TCCGAGTTTGCTTACCGCGAGTTCGCCGCGACGCTAGTCTGCGCGGGGAACCGCCGTAAG 681
Query 600 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGCTCCGCCGGAGTTTCCACC 659
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 682 GAACAGAACATGGTGAAGAAGTCAAAGGGATTCAACTGGGGATCCGCCGGAGTTTCCACC 741
Query 660 TCCGTGTGGCGTGGTGTCCCTCTCTGTGACGTTTTGCGTCGCTGCGGGATCTTTAGCCGG 719
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 742 TCCGTGTGGCGTGGTGTCCCTCTCTGCGACGTACTGCGTCGCTGCGGGATCTTTAGCCGA 801
Query 720 AAAGGCGGTGCTCTGAACGTATGCTTCGAAGGGTCGGAGGATCTCCCGGGCGGTGCCGGA 779
|||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 802 AAAGGCGGCGCTCTCAACGTCTGCTTCGAAGGGTCGGAGGATCTTCCGGGCGGTGCCGGA 861
Query 780 ACTAG-TGGTTCCAAATACGGAACAAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 838
||| | |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 862 ACT-GCTGGTTCCAAATACGGAACGAGCATCAAGAAGGAATATGCCATGGATCCATCAAG 920
Query 839 AGACATCATTTTGGCTTATATGCAAAACGGAGAGCATCTAACACCAGACCACGGGTATCC 898
|||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||
Sbjct 921 AGACATCATTTTGGCTTATATGCAAAACGGAGAGTATCTAACACCAGACCACGGTTTTCC 980
Query 899 AGTTCGGATGATCATCCCCGGTTTCATCGGTGGCCGCATGGTTAAATGGTTGAAGCGAAT 958
|||||||| ||||||||||||||||| |||||||| ||||||||||||||||| |||||
Sbjct 981 GGTTCGGATCATCATCCCCGGTTTCATTGGTGGCCGGATGGTTAAATGGTTGAAACGAAT 1040
Query 959 CATCGTCACCACGAAAGAATCCGACAATTTCTATCATTTCAAGGATAACAGAGTTTTACC 1018
||| ||||| || |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1041 CATTGTCACAACTAAAGAATCCGACAATTTCTACCATTTCAAGGACAACAGAGTTTTACC 1100
Query 1019 TTCTCTAGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCGGAGTACAT 1078
|||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1101 TTCTTTGGTAGACGCCGAACTCGCCGACGAAGAAGGTTGGTGGTATAAGCCAGAGTACAT 1160
Query 1079 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCTTGTCACGAGGAGATTCTTCC 1138
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1161 AATCAACGAGCTAAACATAAACTCCGTGATTACGACGCCATGTCACGAGGAGATTCTTCC 1220
Query 1139 CATCAACGCTTTCACAACCCAAAGACCTTACACTTTAAAGGGTTACGCATATTCCGGAGG 1198
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1221 CATCAACGCTTTCACAACCCAAAGACCTTATACTTTAAAGGGTTACGCATATTCCGGAGG 1280
Query 1199 TGGaaaaaaaGTGACCCGTGTGGAGGTCACGGTGGATGGTGGAGAGACATGGAACGTTTG 1258
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1281 TGGAAAAAAAGTGACCCGTGTGGAGGTCACGGTAGATGGTGGAGAGACATGGAACGTATG 1340
Query 1259 CGAACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1318
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1341 TGCACTTGACCATCAAGAGAAGCCAAACAAGTATGGGAAGTTCTGGTGTTGGTGTTTTTG 1400
Query 1319 GTCACTTGAGGTTGAGGTTTTGGACCTGCTTAGTGCCAAGGAGATTGCTGTCCGTGCATG 1378
||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||||||
Sbjct 1401 GTCACTTGAGGTTGAGGTTTTGGACTTGCTTAGTGCCAAAGAGATTGCTGTTCGTGCATG 1460
Query 1379 GGACGAGACTCTTAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1438
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1461 GGACGAGACTCTCAACACGCAGCCCGAGAAAATGATATGGAATCTCATGGGGATGATGAA 1520
Query 1439 TAACTGCTGGTTTAGAGTTAAGACTAACGTGTGCAAGCCACACAAGGGTGAGATTGGGAT 1498
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1521 TAACTGCTGGTTTAGAGTGAAGACTAACGTGTGCAAGCCACACAAGGGAGAGATTGGGAT 1580
Query 1499 CGTGTTTGAGCATCCAACGCTTCCGGGTAATGAATCTGGTGGATGGATGGCGAAAGAACG 1558
||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1581 TGTGTTCGAGCATCCAACGCTTCCTGGTAATGAATCTGGTGGATGGATGGCGAAGGAACG 1640
Query 1559 TCACCTTGAAAAATCCGCTGACGCGCCTCCTACACTCAAGAAATCTGTCTCGACACCGTT 1618
|||||| |||||||| |||||||||||||||| || ||||| ||||||||||| |||||
Sbjct 1641 TCACCTCGAAAAATCGGCTGACGCGCCTCCTAGTCTAAAGAAGTCTGTCTCGACGCCGTT 1700
Query 1619 TATGAACACAACTGCGAAGATGTATTCGATGTCCGAGGTCAAGAAGCATAATTCTGCTGA 1678
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1701 TATGAACACAACTGCGAAGATGTACTCGATGTCCGAGGTCAAGAAGCATAATTCGGCTGA 1760
Query 1679 TTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACCCGCTTCCTTATGGACCA 1738
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||
Sbjct 1761 CTCTTGCTGGATCATTGTCCATGGACATATCTATGATTGTACACGATTCCTTATGGATCA 1820
Query 1739 CCCGGGTGGTTCGGATTCGATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1798
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1821 CCCGGGTGGTTCGGATTCAATCTTGATCAATGCTGGTACGGATTGTACGGAGGAGTTTGA 1880
Query 1799 AGCCATTCACTCTGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1858
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1881 AGCCATTCACTCGGATAAAGCCAAGAAGATGCTTGAGGATTACCGTATCGGTGAGCTCAT 1940
Query 1859 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCAGTTCACGGTTCATCCGC 1918
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1941 CACCACTGGTTATTCCTCTGACTCTTCCTCGCCTAACAACTCGGTTCACGGTTCATCCGC 2000
Query 1919 CGTGTTCTCGTTGTTAGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 1978
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2001 CGTGTTCTCGCTGTTGGCTCCCATTGGAGAGGCGACTCCGGTTAGGAACCTCGCTTTGGT 2060
Query 1979 TAATCCCCGGGCTAAAGTCCCGGTTCAACTTGTCGAAAAGACTTCCATTTCTCATGATGT 2038
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2061 TAATCCCCGGGCTAAAGTCCCGGTTCAACTCGTCGAAAAGACTTCCATTTCTCATGATGT 2120
Query 2039 TCGTAAATTCCGGTTTGCTTTACCAGTTGAGGACATGGTCCTAGGCTTACCGGTTGGTAA 2098
|||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||||
Sbjct 2121 TCGTAAATTCCGGTTTGCTTTACCGGTTGAGGATATGGTTCTAGGCTTACCGGTTGGTAA 2180
Query 2099 GCACATTTTCCTCTGCGCCACCATCAATGACAAGCTCTGCCTCAGGGCTTACACACCAAG 2158
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2181 GCACATTTTCCTTTGCGCCACCATCAATGACAAGCTCTGCCTCAGAGCTTACACACCAAG 2240
Query 2159 CAGCACCGTTGATGTGGTTGGCTACTTCGAACTTGTGGTCAAGATTTACTTTGGTGGTGT 2218
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 2241 CAGCACCGTTGATGTGGTTGGCTACTTCGAGCTCGTGGTCAAGATTTACTTTGGCGGTGT 2300
Query 2219 CCACCCGAGATTCCCCAATGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2278
|||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 2301 CCACCCAAGATTCCCTAACGGCGGGCTCATGTCTCAGTACCTAGACTCTTTGCCTATAGG 2360
Query 2279 GTCAACTTTGGAGATTAAAGGACCGTTGGGTCATGTTGAGTATCTCGGCAAGGGTAATTT 2338
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||
Sbjct 2361 GTCAACTTTGGAGATTAAAGGACCATTGGGTCACGTTGAGTATCTCGGCAAGGGTAGTTT 2420
Query 2339 CACGGTTCACGGTAAACCGAAGTTTGCTGATAAGTTGGCAATGTTGGCAGGTGGAACCGG 2398
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 2421 CACGGTTCACGGTAAACCAAAGTTTGCTGATAAATTGGCAATGTTGGCAGGTGGAACCGG 2480
Query 2399 TATAACTCCGGTTTACCAAATCATTCAGGCCATTCTGAAGGATCCAGAGGATGAGACTGA 2458
|||||||||||||||||||| || || |||||||| |||||||||||||||||||||||
Sbjct 2481 AATAACTCCGGTTTACCAAATTATCCAAGCCATTCTCAAGGATCCAGAGGATGAGACTGA 2540
Query 2459 GATGTATGTGATTTATGCTAACCGGACCGAGGAAGATATTCTGCTAAGGGAGGAATTGGA 2518
||||| || |||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 2541 AATGTACGTCATTTATGCTAACCGGACCGAGGAAGATATTCTCCTAAGGGAGGAACTGGA 2600
Query 2519 TGGTTGGGCAGTGCAGTACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCGGCTAA 2578
||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2601 TGGTTGGGCAGAGCAATACCCGGACCGGTTAAAGGTTTGGTACGTAGTGGAATCAGCTAA 2660
Query 2579 AGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2638
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2661 GGAAGGTTGGGCATACAGTACCGGGTTTATTTCCGAGGCGATTATGCGAGAACATATCCC 2720
Query 2639 TGATGGATTAGATGGCTCATCCCTTGCCATGGCTTGTGGACCACCACCGATGATTCAGTT 2698
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 2721 TGATGGATTAGATGGCTCAGCCCTTGCCATGGCTTGCGGACCACCACCGATGATTCAGTT 2780
Query 2699 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2758
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2781 TGCGGTTCAGCCGAATTTGGAGAAGATGCAATATAACATCAAGGAGGATTTCTTGATATT 2840
Query 2759 CTAGTCTAAAGCCAAGAGATTT 2780
||||||||||||||||| ||||
Sbjct 2841 CTAGTCTAAAGCCAAGATATTT 2862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 138209927965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5