BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg922817
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
AT1G42550.1 | Symbols: PMI1 | plastid movement impaired1 | chr1... 3842 0.0
> AT1G42550.1 | Symbols: PMI1 | plastid movement impaired1 | chr1:15977014-15979952
FORWARD LENGTH=2867
Length=2867
Score = 3842 bits (2080), Expect = 0.0
Identities = 2414/2577 (94%), Gaps = 16/2577 (1%)
Strand=Plus/Plus
Query 4 CTTCTTAC-TCTT-TT-TTCATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACGC 60
|||||| | |||| || | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 99 CTTCTT-CTTCTTCTTCTACATGGCAGGAGAATATTCCGGTAGCCGGAGTTCTAACACAC 157
Query 61 AGCTTCTCGCGGAACTCGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 120
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGCTTCTCGCGGAACTTGAAGCTCTAAGTGAAAACCTTTACCAGAAACCTCAGGTTTCAG 217
Query 121 TCGGAAACCGGAGAACCAACTCTCTCGCTCTCCCGCGCAGTTCTGTTCCATCGCTTGTTA 180
| |||||| ||||||| ||||||||||||||||| || ||||||||||| ||||||||||
Sbjct 218 TTGGAAACAGGAGAACAAACTCTCTCGCTCTCCCTCGGAGTTCTGTTCCGTCGCTTGTTA 277
Query 181 CCTCTGCCGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCACGGG 240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 278 CCTCTGCTGATGAAGTGAGTACAGCACGAGCTGAGGATTTGACAGTATCGAAGCCGCGGG 337
Query 241 CTCGGCGTTTGTCGCTGTCTCCGTGGCGGTCGAGACCCAAGCTTGAGGTAGAGGAGGAAG 300
|||||||||| |||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 338 CTCGGCGTTTATCGCTGTCTCCGTGGCGGTCGAGACCGAAACTTGAGGTAGAGGAGGAAG 397
Query 301 ATAATGTGACTCAGAACAACAGGATTGTCAAGAAACCAGAGGAGTCATCGTCGGGCTCGG 360
| ||||| ||||||| |||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 398 AGAATGTTACTCAGAGCAACAGGATTGTCAAGAAACCAGAGGAGTCGTCATCGGGTTCGG 457
Query 361 TTGCCAAGGATGAGAAAAAAGGGATATGGAATTGGAAGCCGATTCGAGGGCTAGTTCGGA 420
|| ||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 458 GTGTGAAGGAAGAGAAGAAAGGGATTTGGAATTGGAAGCCGATTCGAGGGCTGGTTCGGA 517
Query 421 TTGGTATGCAGAAGCTAAGTTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 518 TTGGTATGCAGAAGCTAAGCTGTTTGTTATCAGTGGAGGTTGTGGCGGCGCAGAATCTTC 577
Query 481 CGGCCTCAATGAACGGTCTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACAAAAGACG 540
| || || ||||| ||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 578 CAGCGTCGATGAATGGTTTACGCCTTGGAGTTTGCGTGAGGAAGAAGGAAACTAAAGACG 637
Query 541 GTGCCGTTCAGACGATGCCCTGTAGGGTTTCTCAGGGTTCTGCGGATTTTGAGGAGACAT 600
|||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
Sbjct 638 GTGCTGTTCAGACGATGCCGTGTAGGGTTTCTCAGGGTTCTGCTGATTTTGAGGAGACCT 697
Query 601 TGTTCATCAAGTGCCATGTGTACTACACACCGGCGAACGGAAAAGGTAGTCCGGCGAAGT 660
|||| ||||||||||||||||| ||| ||||||||||||| ||||||||||| |||||||
Sbjct 698 TGTTTATCAAGTGCCATGTGTATTACTCACCGGCGAACGGTAAAGGTAGTCCAGCGAAGT 757
Query 661 TTGAGGCTCGTCCGTTTTTGTTTTATCTCTTT-GCCGTGGACGCCAAGGAATTGGAGTTT 719
|||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||
Sbjct 758 TTGAGGCTCGTCCGTTTTTGTTTTATCT-TTTCGCCGTGGATGCCAAGGAACTGGAGTTT 816
Query 720 GGAAGGCATGTGGTGGATTTGAGCGAATTGATTCAGGAGTCGGTAGGGAAGATGAGTTAT 779
||||||||||||||||||||||| || ||||||||||||||||||| |||||||| |||
Sbjct 817 GGAAGGCATGTGGTGGATTTGAGTGAGTTGATTCAGGAGTCGGTAGAGAAGATGAATTAC 876
Query 780 GAAGGAGCTAGGGTTAGGCAATGGGATATGAGTTGGGGGCTTTCAGGGAAGGCTAAAGGA 839
||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 877 GAAGGAGCTAGGGTTAGGCAATGGGATATGAATTGGGGACTTTCAGGGAAGGCTAAAGGG 936
Query 840 GGTGAATTGGCTCTGAAATTAGGGTTTCAGATCATGGAGAAAGACGGTGGAGCTGGGATT 899
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 937 GGTGAATTGGCTTTGAAATTAGGGTTTCAGATTATGGAGAAAGACGGTGGAGCTGGGATT 996
Query 900 TACAGTAAACAAGGAGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTTGCTAAT 959
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 997 TACAGTAAACAAGGCGAATTCGGGATGAAACCGAGTAGTAAACCTAAGAATTTCGCTAAT 1056
Query 960 TCCTTCGGGCGAAAGCAATCGAAGACGTCGTTTAGTGTGCCGAGCCC-AAAGATGACGAG 1018
|||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 1057 TCCTTCGGTCGAAAGCAATCGAAGACGTCGTTTAGTGTTCCGAGCCCTAAA-ATGACGAG 1115
Query 1019 CCGGAGCGAGGCCTGGACGCCAGCGAGTGGCGCGGAGTCAGTAACAGATCTTCAAGGGAT 1078
|||||||||||| ||||||||||||||||| | ||||||||| | ||| |||| |||||
Sbjct 1116 CCGGAGCGAGGCGTGGACGCCAGCGAGTGGTGTGGAGTCAGTTTCGGATTTTCACGGGAT 1175
Query 1079 GGAGCATTTGAATCTAGATGAACCCGAGGAGAAACCCGAAGTGAAACCGGTTCAG-AAAA 1137
||||||||||||||| |||||||| |||||||||||||| | ||||||||||||| ||||
Sbjct 1176 GGAGCATTTGAATCTGGATGAACCTGAGGAGAAACCCGAGGAGAAACCGGTTCAGAAAAA 1235
Query 1138 CAGAGGAACCAGAACAGAGAGCTGAAGATGATCAAGAGGAACCTGATTTTGAAGTTGTGG 1197
| || |||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1236 C-GACAAACCGGAACAGAGAGCTGAAGATGATCAAGAGGAACCAGATTTTGAAGTTGTGG 1294
Query 1198 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGGG 1257
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1295 ATAAAGGAGTTGAGTTTGATGATGACTTGGAAACTGAGAAATCTGATGGAACCATAGGTG 1354
Query 1258 AAAGATCCGTTGAGATGAAGGAACAACATGTTAATGTTGATGATGCTCGGCACATAATGA 1317
||||||| |||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 1355 AAAGATCTGTTGAGATGAAGGAACAACATGTTAATGTTGATGATCCACGGCACATAATGA 1414
Query 1318 GACTTAGCGAGCTTGATTCGATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1377
|||| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1415 GACTCACCGAGCTTGATTCAATTGCAAAGCAGATCAAAGCGCTTGAATCGATGATGAAAG 1474
Query 1378 ACGAGAATGATGGAGGAGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1437
|||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1475 ACGAGAGTGATGGAGGTGATGGTGAAACAGAGTCACAAAGGCTAGATGAAGAGGAACAAA 1534
Query 1438 CGGTGACAAAGGAGTTTCTTCAGTTGCTTGAGGATGAAGAAACCGAGAAGCTCAAATTCT 1497
| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |
Sbjct 1535 CTGTGACAAAGGAGTTTCTTCAGTTACTTGAGGATGAAGAAACCGAGAAGCTGAAATTTT 1594
Query 1498 ACCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCGGTAGATGATGAATCTG 1557
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
Sbjct 1595 ATCAGCACAAAATGGACATCTCTGAACTGCGGTCTGGCGAATCCGTAGACGATGAATCGG 1654
Query 1558 AGAATTACCTCTCAGATCTCGGGAAAGGCATCGGTTGCGTTGTTCAGACGA-GAGACGGT 1616
||||||||||||| |||||||| |||||||| ||||||||||||||||| | ||||||||
Sbjct 1655 AGAATTACCTCTCGGATCTCGGTAAAGGCATTGGTTGCGTTGTTCAGAC-ACGAGACGGT 1713
Query 1617 GGTTACTTAGTTTCTATGAACCCTTTCGACGCGGTCGTTATGAGGAAAGACACTCCTAAG 1676
||||||||||| |||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 1714 GGTTACTTAGTCTCTATGAACCCTTTCGACACGGTGGTCATGAGGAAAGACACTCCTAAG 1773
Query 1677 CTTGTTATGCAAATCTCGAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1736
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 CTTGTTATGCAAATCTCCAAACAGATTGTGGTACTACCAGAAGCCGGACCAGCCACTGGA 1833
Query 1737 TTCGAGCTATTTCATAGAATGGCGGGTTTGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1796
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1834 TTCGAGCTATTTCATAGAATGGCGGGTTCGGGTGAGGAACTAGAGTCAAAGATATCTTCG 1893
Query 1797 CTTATGGCGATAGACGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTCGAAGGAATA 1856
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1894 CTTATGGCGATAGATGAGCTAATGGGGAAAACAGGGGAGCAAGTGGCTTTTGAAGGAATA 1953
Query 1857 GCGTCAGCGATTATACAGGGGAGGAACAAAGAGAGAGCGAACACTAGCGCAGCGCGGACT 1916
||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||
Sbjct 1954 GCGTCAGCGATTATACAAGGGAGGAACAAAGAGAGAGCTAACACGAGCGCAGCGCGAACT 2013
Query 1917 GTTGCAGCTGTTAAAACAATGGCTAACGCAATGAGCAGCGGAAGAAGGGAGAGAATAATG 1976
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2014 GTCGCAGCTGTTAAAACAATGGCTAACGCGATGAGCAGCGGAAGAAGGGAGAGAATAATG 2073
Query 1977 ACCGGAATCTGGAACGTGGAGGAGAATCCACTGACGTCGGCAGAGGAGGTTTTAGCCGTC 2036
||||| || ||||| ||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2074 ACCGGTATATGGAATGTGGAGGAGAATCCATTGACTTCGGCAGAGGAGGTTTTAGCCGTC 2133
Query 2037 TCTTTACAGAAACTAGAGGAAATGGTGGTTGAAGGACTAAAGATTCAAGCTGACATGGTG 2096
|||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 2134 TCTTTACAGAAACTAGAGGAAATGGTTGTTGAAGGACTTAAGATTCAAGCTGACATGGTG 2193
Query 2097 GATGATGATGCACCTTTCGAGGTTTCCGCTGCCAAAGGTCAGAAGAATCCACTTGAATCG 2156
|||||||| || |||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 2194 GATGATGAAGCTCCTTTCGAGGTTTCGGCTGCGAAAGGTCAGAAGAATCCACTTGAATCG 2253
Query 2157 ACCATTCCACTTGACGAGTGGCTAAAGGAGAATCGCACACAGAAAAAGCTAACACTTTTG 2216
|||||||| || || || |||| ||||||| ||||||||||| |||||||||| |||||
Sbjct 2254 ACCATTCCGCTGGAAGAATGGCAAAAGGAGCATCGCACACAGCAAAAGCTAACGGTTTTG 2313
Query 2217 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATACGAAGCGGTGGGAGGGACAGTGGTG 2276
||||||||||||||||||||||||||||||||||| || || || ||||||||||| |||
Sbjct 2314 GCGACAGTACAGCTCCGTGACCCGACAAGGAGATATGAGGCTGTAGGAGGGACAGTTGTG 2373
Query 2277 GTGGCAGTACAAGCGGAAGAAGAGGAAGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2336
|| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2374 GTAGCAGTACAAGCGGAAGAGGAGGAGGAGAAAGGGTTAAAGGTAGGAAGTTTGCACATT 2433
Query 2337 GGGGGAGTGAAAAAAGATGCGGCAGAGAAGCGGAGGCTTATGGCGGCGCAATGGCTTGTG 2396
||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||
Sbjct 2434 GGGGGAGTGAAGAAAGATGCGGCGGAGAAGCGGAGGCTTACCGCGGCGCAATGGCTTGTG 2493
Query 2397 GAACACggaatgggaaagaaagggaagaagaagagtaatataaagaagaaggagaaggaa 2456
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2494 GAACACGGAATGGGAAAGAAAGGGAAGAAGAAGAGTAATATAAAGAAGAAGGAGAAGGAA 2553
Query 2457 gaagaagagga--a-ATGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTC 2513
|||||||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2554 GAAGAAGAAGAGGAGATGTTGTGGAGCTTGTCATCTAGAGTAATGGCGGATATGTGGCTT 2613
Query 2514 AAATCTATAAGGAACCCTGATGTGAGATTGCAT-AGCTGATCTTTGAGATATTCATA 2569
||||||||||||||||||||||||| ||||||| || ||||||| ||| ||||||||
Sbjct 2614 AAATCTATAAGGAACCCTGATGTGAAATTGCATTAGTTGATCTTGGAGGTATTCATA 2670
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127674869935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5