BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922848 Length=1134 Score E Sequences producing significant alignments: (Bits) Value AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 | ch... 643 0.0 > AT1G43640.1 | Symbols: AtTLP5, TLP5 | tubby like protein 5 | chr1:16439435-16441844 REVERSE LENGTH=1594 Length=1594 Score = 643 bits (348), Expect = 0.0 Identities = 700/858 (82%), Gaps = 72/858 (8%) Strand=Plus/Plus Query 296 GAGTTCTCAGGCAAACTCACACGTTT-CTGATAACTCTTTGATTGTGCAGCCTGGGCCTA 354 ||||||||||||||||||||| ||| | | | || |||| ||||| ||||||| Sbjct 433 GAGTTCTCAGGCAAACTCACA--TTTCCAG-T--TTCGTTGA---AACAGCCCGGGCCTA 484 Query 355 GGGACGGAACCATACAATGCTT-CATCAAAAGGGACAAGTCTAATATGACTTACCACCTT 413 |||| |||| ||||||||| || |||||||| ||||||||||| ||||||||||||||| Sbjct 485 GGGATGGAATCATACAATG-TTATATCAAAAGAGACAAGTCTAACATGACTTACCACCTT 543 Query 414 TACCTTTCTCTTAGTCCTTCCTTACTTGTTGAAAGTGGAAAGTTTCTTCTCTCGGCAAAG 473 |||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| Sbjct 544 TACCTTTCTCTTAGTCCTGCCATACTTGTTGAAAGTGGGAAGTTTCTTCTCTCGGCAAAG 603 Query 474 CGCACCCGAAGAGCTACATACATAGAGTACGTGATATCGATGGATGCTGATAACATTTCG 533 ||| | || ||||||||||||| |||||| || ||||| |||||||| || |||||||| Sbjct 604 CGCTCACGGAGAGCTACATACACAGAGTATGTAATATCAATGGATGCAGACAACATTTCA 663 Query 534 CAG-TCAAGCAGCAGTTACATTGGCAAAATGAGGTCTAACTTTCTAGGGACAAAATTTGT 592 || |||||||||| ||||||||||||| ||| ||||||||||||||||||||||||| | Sbjct 664 -AGATCAAGCAGCACTTACATTGGCAAACTGAAGTCTAACTTTCTAGGGACAAAATTTAT 722 Query 593 AATATACGATACAGCGCCTGCGCACAACGGTTGCCAAATAATGTCCTCACCAAGCCGGAG 652 | |||| ||||| || |||||| ||||| || |||| ||| ||||| |||||| |||||| Sbjct 723 AGTATATGATACGGCTCCTGCGTACAACAGTAGCCAGATATTGTCCCCACCAAACCGGAG 782 Query 653 TCGTAGGTTCAGCTCCAAGAAAGTCTCTCCCAAAGTCCCCTCTGGAAGTTACAACATTGC 712 |||||| |||| |||||||||||| |||||||||||||| |||||||||||||||||||| Sbjct 783 TCGTAGTTTCAACTCCAAGAAAGTGTCTCCCAAAGTCCCTTCTGGAAGTTACAACATTGC 842 Query 713 CCAAGTTACATATGAACTGAACTTGCTTGGAACCCGTGGACCTCGCAAGA-TGCACTGCA 771 ||||||||||| || ||||||||||||||||||||||||||||| | || || |||||| Sbjct 843 TCAAGTTACATACGAGCTGAACTTGCTTGGAACCCGTGGACCTCGTA-GAATGAACTGCA 901 Query 772 TTATGCATTCTAT----TCGT--GCTTTAG--CTC-----TA--G------GCCAACCTG 810 ||||||| ||||| || | ||| ||| | | || | ||||||||| Sbjct 902 TTATGCACTCTATCCCCTCCTTAGCTCTAGAACCCGGAGGTACTGTCCCTAGCCAACCTG 961 Query 811 AGCTTCTTCAACACTCCTTTGATGAATCTTTCGGCAGCATCGGTTCCTCAAAGATAATCG 870 || |||| |||| ||| |||||||||||||| ||||||||||||||||||||||| || Sbjct 962 AGTTTCTACAACGTTCCCTTGATGAATCTTTCCGCAGCATCGGTTCCTCAAAGATAGTCA 1021 Query 871 ACCACTCGGGGGATTTTAGCAGCGCCCGGTTCTCTGACATTGTTGGATCGCAAGAGGAAG 930 |||||||||| ||||| || | || | | | || | | | | | | ||| Sbjct 1022 ACCACTCGGGAGATTT---CA-C-CC-GA--C-C-GA-A-------A--G-A-G-G-AAG 1057 Query 931 AAGGAAAGGAACGAACTTTGGTGCTTAAAAAC-AAACCGCCGAGGTGGCATGGAAA-GCT 988 ||||||||| ||| ||||||| || |||| | |||||||| ||||||| | || | | Sbjct 1058 AAGGAAAGGTGCGACCTTTGGTACTGAAAA-CTAAACCGCCAAGGTGGC-TCCAACCGTT 1115 Query 989 GCGGTGCTGGTGCCTTCACTTCAGAGGGAGAGTGACAGTTGCTTCCGTCAAGAACTTCCA 1048 ||| || ||||||||| |||||| |||||||||||| || ||||| |||||||||||||| Sbjct 1116 GCGATGTTGGTGCCTTAACTTCAAAGGGAGAGTGACTGTAGCTTCTGTCAAGAACTTCCA 1175 Query 1049 ATTGATGTCCGCTGCAACGGTTCAACCTGGTCCAGATAGGCAGATAGTGGTGCTGGAGCA 1108 ||||||||||||||||||||||| || ||| || | || ||||| || ||||||| Sbjct 1176 GTTGATGTCCGCTGCAACGGTTCAGCCCGGT--AG-T-GG----TAGTGATGGTGGAGCA 1227 Query 1109 TTGACCACGAGGCCATCG 1126 ||| | |||||||||||| Sbjct 1228 TTGGCTACGAGGCCATCG 1245 Score = 292 bits (158), Expect = 4e-78 Identities = 258/304 (85%), Gaps = 15/304 (5%) Strand=Plus/Plus Query 4 CTTTGGTATTGGGATAAATGACGTTTCGT-AGCATTGTTCGTGATGTTAGAGATAGTATA 62 |||||||||| ||| ||||| |||||| | || |||||||||||||||||||||| | || Sbjct 104 CTTTGGTATTCGGAAAAATGTCGTTTC-TGAGTATTGTTCGTGATGTTAGAGATACTGTA 162 Query 63 GGAAGCTTTTCGAGACGTAGTGTCGAAGTGAGAGTGTCTAATGAGACTAGTAAATCTCAC 122 ||||||||||||||||||||| |||| |||||||| ||||||| ||| | | ||| | Sbjct 163 GGAAGCTTTTCGAGACGTAGTTTCGACGTGAGAGTATCTAATGGGACGACT-CATCAGAG 221 Query 123 G-GTGCAT-T----G-GTTGAGACACATGATCAAGAAGATCTTGTTGTAATCAAGAACAC 175 | || || | | |||||| ||||| || ||||||||| |||||||||||||||| Sbjct 222 GAGTAAATCTCACGGTGTTGAGGCACAT-AT--TGAAGATCTTATTGTAATCAAGAACAC 278 Query 176 TCGTTGGGCTAATTTGCCAGCTGAGGTGCTACGTGATGTGATGAAAAAGTTGGATGAAAG 235 ||||||||||||||| || |||| | | |||| |||||||||||||||||||||||||| Sbjct 279 TCGTTGGGCTAATTTACCGGCTGCGCTATTACGAGATGTGATGAAAAAGTTGGATGAAAG 338 Query 236 CGAGAGCACGTGGCCTG-ATCGTAAACAAGTTGTTGCTTGTGCTGGTGTCTGCAAGACAT 294 |||||| || ||||||| | ||||||||||| |||||||||||||||||||||||||||| Sbjct 339 CGAGAGTACTTGGCCTGCA-CGTAAACAAGTCGTTGCTTGTGCTGGTGTCTGCAAGACAT 397 Query 295 GGAG 298 |||| Sbjct 398 GGAG 401 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55622203860 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5