BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922911 Length=901 Score E Sequences producing significant alignments: (Bits) Value AT1G44575.1 | Symbols: NPQ4, PSBS | Chlorophyll A-B binding fam... 1393 0.0 > AT1G44575.1 | Symbols: NPQ4, PSBS | Chlorophyll A-B binding family protein | chr1:16871696-16873383 FORWARD LENGTH=1059 Length=1059 Score = 1393 bits (754), Expect = 0.0 Identities = 842/885 (95%), Gaps = 4/885 (0%) Strand=Plus/Plus Query 20 AATGGCTCAAACCATGCTGCTTACTTCCGGCGTCACCGCCGGCCAATTCTTGAGGAACAA 79 ||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| Sbjct 72 AATGGCTCAAACCATGCTGCTTACTTCAGGCGTCACCGCCGGCCATTTTTTGAGGAACAA 131 Query 80 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 139 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 132 GAGCCCTTTGGCTCAGCCCAAAGTTCACCATCTCTTCCTCTCTGGAAACTCTCCGGTTGC 191 Query 140 TCTACCATCTCGTAGACAATCATTCGTTCCTCTTGCTCTCTTCAAATCCAAAACCAAAGC 199 ||||||||| | |||||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 192 ACTACCATCTAGGAGACAATCATTCGTTCCTCTCGCTCTCTTCAAACCCAAAACCAAAGC 251 Query 200 TGCTCCCAAAAAGGTTGAGAAGCCGAAGAAAAAGGTTGAGGATGGGATCTTTGGTACGTC 259 |||||| |||||||||||||||||||||| |||||||||||||| |||||||| ||||| Sbjct 252 TGCTCCTAAAAAGGTTGAGAAGCCGAAGAGCAAGGTTGAGGATGGCATCTTTGGAACGTC 311 Query 260 AGGTGGGATAGGTTTCACGAAGGCGAATGAGCTATTCGTGGGCCGTGTCGCTATGATCGG 319 |||||||| |||||||| |||||||||||||||||||| || ||||| ||||||||||| Sbjct 312 TGGTGGGATTGGTTTCACAAAGGCGAATGAGCTATTCGTTGGTCGTGTTGCTATGATCGG 371 Query 320 TTTCGCTGCATCGTTG-TTGGGTGAGGCGTTGACGGGAAAAGGAATATTAGCTCAGCTGA 378 |||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||| Sbjct 372 TTTCGCTGCATCGTTGCTT-GGTGAGGCGTTGACGGGAAAAGGGATATTAGCTCAGCTGA 430 Query 379 ATCTGGAGACAGGGATACCAATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTAT 438 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 431 ATCTGGAGACAGGGATACCGATTTACGAAGCAGAGCCATTGCTTCTCTTCTTCATCTTGT 490 Query 439 TCACTTTGTTGGGGGCCATTGGAGCTCTCGGAGACAGAGGACAATTCGTCGACGATCCTC 498 ||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 491 TCACTCTGTTGGGAGCCATTGGAGCTCTCGGAGACAGAGGAAAATTCGTCGACGATCCTC 550 Query 499 CCACCGGACTCGAAAAAGCCGTCATTCCTCCCGGGAAAAGTGTCCGATCTGCCCTCGGTC 558 ||||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||||| Sbjct 551 CCACCGGGCTCGAGAAAGCCGTCATTCCTCCCGGCAAAAACGTCCGATCTGCCCTCGGTC 610 Query 559 TCAAAGAACAAGGTCCATTGTTTGGGTTCACAAAGGCGAACGAGCTATTCGTAGGAAGAT 618 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 611 TCAAAGAACAAGGTCCATTGTTTGGGTTCACGAAGGCGAACGAGTTATTCGTAGGAAGAT 670 Query 619 TGGCACAGCTGGGAATAGCATTTTCACTGATCGGAGAGATTATAACCGGGAAAGGAGCAT 678 |||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||| Sbjct 671 TGGCACAGTTGGGAATAGCATTTTCACTGATAGGAGAGATTATTACCGGGAAAGGAGCAT 730 Query 679 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTCGTCCTCT 738 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 731 TAGCTCAACTCAACATTGAGACCGGTATACCAATTCAAGATATCGAACCACTTGTCCTCT 790 Query 739 TAAATGTTGCTTTCTTCTTCTTTGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 798 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 791 TAAACGTTGCTTTCTTCTTCTTCGCTGCCATTAATCCTGGTAATGGAAAATTCATCACCG 850 Query 799 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAG--TGTGTGACCAT 856 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | Sbjct 851 ATGATGGTGAAGAAAGCTAAATTATCATGTACTTAAATTTAGTAGAGAGTGTGTGACCTT 910 Query 857 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 901 ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 911 CTCTTCATGTTGAGACAAAAGGAAATGGACAGCTTAAATTGTTGT 955 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44005112772 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5