BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg922941 Length=1240 Score E Sequences producing significant alignments: (Bits) Value AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1... 2058 0.0 AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATP... 1432 0.0 > AT1G45000.1 | Symbols: | AAA-type ATPase family protein | chr1:17009141-17011886 FORWARD LENGTH=1558 Length=1558 Score = 2058 bits (1114), Expect = 0.0 Identities = 1198/1240 (97%), Gaps = 0/1240 (0%) Strand=Plus/Plus Query 1 AATTTTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGG 60 |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 60 AATTCTGAGATCTGTAAAAGATGAGCGACGGAGACGACGCTGCTAGACGCCGTACCGCGG 119 Query 61 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 120 CGGTGACTGATTACCGGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGAA 179 Query 121 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 CAGCTAGGGAGAATTTAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGA 239 Query 181 AGTCTCTTCAAAGTGTTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGC 240 ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| Sbjct 240 AGTCTCTTCAAAGCGTTGGCCAGATTATTGGAGAAGTACTACGTCCTCTTGATAACGAGC 299 Query 241 GATTGATTGTTAAGGCGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTG 300 |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | Sbjct 300 GATTGATTGTTAAGGCAAGTAGTGGCCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTGG 359 Query 301 ACAAGGAAAAGCTGACTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAA 360 ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| | Sbjct 360 ACAAGGAAAAGCTTACTTCTGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATTA 419 Query 361 TGCGAGCCCTTCCTCGTGAAGTCGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 420 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 420 TGCGAGCCCTTCCTCGTGAAGTTGATCCTGTTGTTTATAACATGTTGCATGAAGATCCAG 479 Query 421 GTAACATTAGTTACTCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAAT 480 | |||||||||||||| ||||||||||||||||||||||||||||||||||| || |||| Sbjct 480 GCAACATTAGTTACTCAGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTTAGGGAAT 539 Query 481 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTA 540 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 540 CTATTGAGCTGCCTCTCATGAATCCTGAACTTTTCCTTAGAGTTGGGATTAAACCTCCTA 599 Query 541 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTG 600 ||||||||||||||||||||||||||||||||||||||||| || |||||||||| |||| Sbjct 600 AGGGTGTCCTTCTGTATGGACCTCCGGGTACTGGAAAAACTCTACTAGCTAGGGCTATTG 659 Query 601 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACA 660 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 660 CCAGCAATATCGACGCCAACTTCTTGAAGGTTGTATCTAGTGCAATCATAGACAAATACA 719 Query 661 TTGGAGAAAGTGCTAGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTT 720 |||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| Sbjct 720 TTGGAGAAAGTGCTAGGTTGATTCGAGAAATGTTTAACTATGCTCGTGAACATCAGCCTT 779 Query 721 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTA 780 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 780 GTATCATTTTCATGGATGAAATCGATGCTATTGGTGGACGCCGTTTTAGTGAAGGAACTA 839 Query 781 GTGCTGATCGTGAAATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTG 840 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 840 GTGCTGATCGTGAAATTCAAAGAACACTTATGGAGTTACTTAACCAGCTTGATGGGTTTG 899 Query 841 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 900 ACCAACTTGGAAAGGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAG 959 Query 901 CACTTCTCCGTCCTGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAAT 960 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 960 CACTTCTCCGTCCGGGTAGGTTAGATAGAAAGATCGAGATCCCGTTGCCAAATGAACAAT 1019 Query 961 CAAGAATGGAAATCCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACT 1020 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1020 CAAGAATGGAAATCCTCAAGATCCACGCATCTGGCATTGCCAAGCATGGAGAAATAGACT 1079 Query 1021 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1080 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1080 ATGAGGCTATCGTGAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCA 1139 Query 1081 CTGAAGCTGGAATGTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCA 1140 |||||||||||||||| || || ||||| ||||||||||||||||| ||||||||||||| Sbjct 1140 CTGAAGCTGGAATGTTCGCAATCAGAGCAGAGCGTGACTATGTAATACATGAAGACTTCA 1199 Query 1141 TGAAGGCGGTGAGAAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACG 1200 ||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 1200 TGAAGGCTGTGAGAAAGCTGAGCGAGGCCAAGAAGCTTGAGTCGAGCTCTCACTATAACG 1259 Query 1201 CGGATTTCGGGAAAGAGTAAGAAAAGAACGAGCTCAGAGA 1240 ||||||| |||||||||||||||||||| |||||||||| Sbjct 1260 CGGATTTTGGGAAAGAGTAAGAAAAGAATAAGCTCAGAGA 1299 > AT5G43010.1 | Symbols: RPT4A | regulatory particle triple-A ATPase 4A | chr5:17248290-17251134 REVERSE LENGTH=1593 Length=1593 Score = 1432 bits (775), Expect = 0.0 Identities = 1065/1209 (88%), Gaps = 4/1209 (0%) Strand=Plus/Plus Query 16 AAAAGATGAGCGACGGAGACGACGCCGCTAGACGCCGTACCGCGGCGGTGACTGATTACC 75 ||| ||||| ||||| || || ||| |||||||||||| || || || | || |||| Sbjct 116 AAACGATGACCGACGTCGATGAATCCGTTAGACGCCGTACAGCCGCCGTTTCCGAGTACC 175 Query 76 GGAAGAAGCTCCTTCATCACAAGGAGCTCGAATCCCGTGTCCGCACAGCTAGGGAGAATT 135 |||| |||||||| || || ||||| |||||||||||||| || |||||||||||||| | Sbjct 176 GGAAAAAGCTCCTCCAACATAAGGAACTCGAATCCCGTGTTCGAACAGCTAGGGAGAACT 235 Query 136 TAAGAGCAGCTAAGAAGGAATTCAACAAAACTGAGGATGATTTGAAGTCTCTTCAAAGTG 195 |||||| |||||| ||||||||||||||||| ||||||||| | |||||||||||||||| Sbjct 236 TAAGAGGAGCTAAAAAGGAATTCAACAAAACCGAGGATGATCTCAAGTCTCTTCAAAGTG 295 Query 196 TTGGTCAGATTATTGGAGAAGTACTACGTCCTCTTGATAATGAGCGATTGATTGTTAAGG 255 |||| ||||||||||||||||| || || || || |||||||| |||||||||| || | Sbjct 296 TTGGGCAGATTATTGGAGAAGTGCTTCGACCCCTGGATAATGAAAGATTGATTGTGAAAG 355 Query 256 CGAGTAGTGGTCCTCGTTATGTGGTGGGTTGTCGTAGCAAGGTTGACAAGGAAAAGCTGA 315 |||| |||||||| ||||||||||||||||| || ||||| || || ||||||||||| | Sbjct 356 CGAGCAGTGGTCCACGTTATGTGGTGGGTTGCCGAAGCAAAGTGGATAAGGAAAAGCTAA 415 Query 316 CTTCGGGAACTCGAGTTGTCCTGGATATGACTACGCTGACAATAATGCGAGCCCTTCCTC 375 | || |||||||||||||| || |||||||| || || ||||| |||||||||||||| | Sbjct 416 CCTCCGGAACTCGAGTTGTTCTCGATATGACAACACTAACAATTATGCGAGCCCTTCCCC 475 Query 376 GTGAAGTCGATCCTGTTGTTTATAACATG-TTGCATGAAGATCCAGGTAACATTAGTTAC 434 | ||||| ||||||||||||||||||||| || |||||||| || || |||||||| ||| Sbjct 476 GAGAAGTTGATCCTGTTGTTTATAACATGCTT-CATGAAGACCCTGGCAACATTAGCTAC 534 Query 435 TCGGCTGTGGGTGGTTTAGGTGATCAGATCAGAGAACTCAGAGAATCTATTGAGCTGCCT 494 || ||||| || || |||||||||||||||||||||||||| |||||||||||||| ||| Sbjct 535 TCCGCTGTCGGAGGGTTAGGTGATCAGATCAGAGAACTCAGGGAATCTATTGAGCTCCCT 594 Query 495 CTCATGAATCCTGAACTTTTCCTTAGAGTAGGGATTAAACCTCCTAAGGGTGTCCTTCTG 554 |||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| Sbjct 595 CTCATGAATCCTGAGCTTTTCCTCAGAGTAGGGATCAAACCTCCAAAGGGTGTCCTTCTG 654 Query 555 TATGGACCTCCGGGTACTGGAAAAACTTTATTAGCTAGGGCCATTGCCAGCAATATCGAC 614 ||||||||||| ||||||||||||||| || |||| ||||| ||||||||||| ||||| Sbjct 655 TATGGACCTCCAGGTACTGGAAAAACTCTACTAGCCAGGGCTATTGCCAGCAACATCGAT 714 Query 615 GCCAACTTCTTGAAGGTTGTATCAAGTGCAATCATAGACAAATACATTGGAGAAAGTGCT 674 || |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| Sbjct 715 GCTAACTTCTTGAAGGTTGTATCCAGTGCAATCATAGACAAGTACATTGGAGAAAGTGCT 774 Query 675 AGGTTGATCCGAGAAATGTTTAACTACGCTCGTGAACACCAGCCTTGTATCATTTTCATG 734 ||| |||| || || ||||||||||| || |||||||| |||||||||||||| |||||| Sbjct 775 AGGCTGATTCGGGAGATGTTTAACTATGCCCGTGAACATCAGCCTTGTATCATATTCATG 834 Query 735 GATGAAATCGATGCTATTGGTGGGCGCCGTTTTAGTGAAGGAACTAGTGCTGATCGTGAA 794 |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| Sbjct 835 GATGAAATCGATGCTATTGGTGGGCGTCGTTTTAGTGAGGGAACTAGTGCTGATCGTGAA 894 Query 795 ATCCAAAGAACACTTATGGAGTTACTCAACCAGCTTGATGGGTTTGACCAACTT-GGAAA 853 || |||||||| |||||||||||||||||||||||||||||||||||| ||| | ||||| Sbjct 895 ATTCAAAGAACGCTTATGGAGTTACTCAACCAGCTTGATGGGTTTGAC-AACCTCGGAAA 953 Query 854 GGTGAAAATGATAATGGCCACCAACAGGCCGGATGTTCTTGATCCAGCACTTCTCCGTCC 913 ||||||||||||||||||||| |||||||| ||||| |||||||| || ||||||||||| Sbjct 954 GGTGAAAATGATAATGGCCACAAACAGGCCTGATGTGCTTGATCCTGCGCTTCTCCGTCC 1013 Query 914 TGGTAGGTTAGATAGAAAGATTGAGATCCCGTTGCCAAATGAACAATCAAGAATGGAAAT 973 || |||||||||||||||||||||||||| |||||||| || || ||||||||||| || Sbjct 1014 GGGAAGGTTAGATAGAAAGATTGAGATCCCTTTGCCAAACGAGCAGTCAAGAATGGATAT 1073 Query 974 CCTCAAGATCCACGCCTCTGGTATTGCCAAGCATGGAGAAATAGACTATGAGGCTATCGT 1033 || |||||||| || ||||||| ||||| ||||| ||||| || || |||||||| || Sbjct 1074 TCTTAAGATCCATGCAGCTGGTATCGCCAAACATGGTGAAATCGATTACGAGGCTATTGT 1133 Query 1034 GAAACTTGGAGAGGGTTTCAATGGTGCCGATCTGCGTAACATATGCACTGAAGCTGGAAT 1093 ||||||| |||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 1134 CAAACTTGCAGAGGGATTCAATGGTGCTGATCTGCGTAACATATGCACGGAAGCTGGAAT 1193 Query 1094 GTTTGCGATAAGAGCGGAGCGTGACTATGTAATCCATGAAGACTTCATGAAGGCGGTGAG 1153 |||||| || |||| ||||| || ||||| ||||||||||| ||||||||||||||||| Sbjct 1194 GTTTGCAATCCGAGCAGAGCGGGATTATGTGATCCATGAAGATTTCATGAAGGCGGTGAG 1253 Query 1154 AAAGCTGAGCGAGGCCAAGAAACTTGAGTCGAGCTCTCACTATAACGCGGATTTCGGGAA 1213 ||||||||| |||||||||||||| ||||| || || ||||||||||| ||||| || || Sbjct 1254 AAAGCTGAGTGAGGCCAAGAAACTGGAGTCCAGTTCGCACTATAACGCTGATTTTGGAAA 1313 Query 1214 AGAGTAAGA 1222 ||||| ||| Sbjct 1314 AGAGTGAGA 1322 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 60943461630 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5